miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16272 3' -58.4 NC_004084.1 + 4162 0.66 0.566805
Target:  5'- gGCCgAUGACGuCGCgGUUGCUCGG-GUCu -3'
miRNA:   3'- -UGG-UACUGC-GCGgUGACGAGUCgCGG- -5'
16272 3' -58.4 NC_004084.1 + 42717 0.66 0.523659
Target:  5'- gACCcUGuCGCGUCggcgaguugaucgGCUGCg-AGCGCCa -3'
miRNA:   3'- -UGGuACuGCGCGG-------------UGACGagUCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 44572 0.66 0.514349
Target:  5'- aACgAUGACGgGCCugGCUGCcacgcagaggUCAuCGCCg -3'
miRNA:   3'- -UGgUACUGCgCGG--UGACG----------AGUcGCGG- -5'
16272 3' -58.4 NC_004084.1 + 15006 0.67 0.504086
Target:  5'- gACgAaGAUGCGCUGCgGCUCgucgAGCGUCg -3'
miRNA:   3'- -UGgUaCUGCGCGGUGaCGAG----UCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 39515 0.67 0.504086
Target:  5'- ----aGcCGCGCCcUUGCUCGGCGUa -3'
miRNA:   3'- ugguaCuGCGCGGuGACGAGUCGCGg -5'
16272 3' -58.4 NC_004084.1 + 29278 0.67 0.504086
Target:  5'- cGCCcgG-CaGCGCCAggUGUUCGGCGUCu -3'
miRNA:   3'- -UGGuaCuG-CGCGGUg-ACGAGUCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 28699 0.68 0.403505
Target:  5'- cGCCcgGACGaucuccucgaacgGCCGCgcggGUUCGGCGCa -3'
miRNA:   3'- -UGGuaCUGCg------------CGGUGa---CGAGUCGCGg -5'
16272 3' -58.4 NC_004084.1 + 1410 0.69 0.398094
Target:  5'- cACC--GGCGuCGCCAUU-CUCGGCGUCg -3'
miRNA:   3'- -UGGuaCUGC-GCGGUGAcGAGUCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 49461 0.7 0.346624
Target:  5'- cGCCGUcuuCGuCGCCGCUGUccucggagucgUCGGCGUCa -3'
miRNA:   3'- -UGGUAcu-GC-GCGGUGACG-----------AGUCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 14854 0.7 0.338522
Target:  5'- cGCCucgucgggAUGACG-GCCGCcgGuCUCGGUGCCg -3'
miRNA:   3'- -UGG--------UACUGCgCGGUGa-C-GAGUCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 38000 0.7 0.322735
Target:  5'- aGCCAgcgaGCGCCAgCUGUUUaucaAGCGCCu -3'
miRNA:   3'- -UGGUacugCGCGGU-GACGAG----UCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 29181 0.71 0.285697
Target:  5'- uCCAgcgGAacuCGCC-CUGCUCGGCGUCg -3'
miRNA:   3'- uGGUa--CUgc-GCGGuGACGAGUCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 54908 0.71 0.271849
Target:  5'- cCCA-GACGCGCUcguACUGCUCGcCGUCu -3'
miRNA:   3'- uGGUaCUGCGCGG---UGACGAGUcGCGG- -5'
16272 3' -58.4 NC_004084.1 + 33116 0.72 0.258545
Target:  5'- gGCCucuGCG-GCUACUGC-CGGCGCCa -3'
miRNA:   3'- -UGGuacUGCgCGGUGACGaGUCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 35364 0.72 0.227612
Target:  5'- uGCCucaACGaCGCCACUGCcgUCAGUGUCg -3'
miRNA:   3'- -UGGuacUGC-GCGGUGACG--AGUCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 29538 0.75 0.166005
Target:  5'- gGCCgGUGACGCGCCGgaGCguaagCAG-GCCg -3'
miRNA:   3'- -UGG-UACUGCGCGGUgaCGa----GUCgCGG- -5'
16272 3' -58.4 NC_004084.1 + 3220 0.75 0.15732
Target:  5'- uACCGUGuCG-GCCACga-UCAGCGCCa -3'
miRNA:   3'- -UGGUACuGCgCGGUGacgAGUCGCGG- -5'
16272 3' -58.4 NC_004084.1 + 46687 1.1 0.000402
Target:  5'- gACCAUGACGCGCCACUGCUCAGCGCCc -3'
miRNA:   3'- -UGGUACUGCGCGGUGACGAGUCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.