miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16272 5' -55.8 NC_004084.1 + 47759 0.66 0.705279
Target:  5'- uUGGCgcgaUCCaucaucGACGCCGcGUuGAUGUCg -3'
miRNA:   3'- uACCGa---AGG------CUGCGGCaCAuCUGCAG- -5'
16272 5' -55.8 NC_004084.1 + 55269 0.66 0.705279
Target:  5'- -cGGU---CGGCGgCGUGUAGAuCGUCa -3'
miRNA:   3'- uaCCGaagGCUGCgGCACAUCU-GCAG- -5'
16272 5' -55.8 NC_004084.1 + 658 0.66 0.694484
Target:  5'- -cGGCgu-CGugGUagGUGUGGAUGUCg -3'
miRNA:   3'- uaCCGaagGCugCGg-CACAUCUGCAG- -5'
16272 5' -55.8 NC_004084.1 + 9149 0.66 0.694484
Target:  5'- -cGaCUUcgCCGuCGCCGUgacGUGGACGUCg -3'
miRNA:   3'- uaCcGAA--GGCuGCGGCA---CAUCUGCAG- -5'
16272 5' -55.8 NC_004084.1 + 6433 0.66 0.677092
Target:  5'- -cGGCUUCaguucgaacgcccacUGGuCGCCGUGgagcgGGAUGUCc -3'
miRNA:   3'- uaCCGAAG---------------GCU-GCGGCACa----UCUGCAG- -5'
16272 5' -55.8 NC_004084.1 + 2145 0.67 0.650813
Target:  5'- cUGGUggUCGACGUCGUacucGUAGGCGa- -3'
miRNA:   3'- uACCGaaGGCUGCGGCA----CAUCUGCag -5'
16272 5' -55.8 NC_004084.1 + 17371 0.67 0.595907
Target:  5'- --cGCUUCUGGaucggGCCGUGUAGAUGcCu -3'
miRNA:   3'- uacCGAAGGCUg----CGGCACAUCUGCaG- -5'
16272 5' -55.8 NC_004084.1 + 39763 0.68 0.574094
Target:  5'- -aGGCUgaucCCGACGCCGa--AGACGg- -3'
miRNA:   3'- uaCCGAa---GGCUGCGGCacaUCUGCag -5'
16272 5' -55.8 NC_004084.1 + 54134 0.68 0.551396
Target:  5'- -cGGCUUCCagcaccuGACGCCGUuc--GCGUCg -3'
miRNA:   3'- uaCCGAAGG-------CUGCGGCAcaucUGCAG- -5'
16272 5' -55.8 NC_004084.1 + 1478 0.68 0.54175
Target:  5'- -cGGCgaUCGACGaCCuccugGUAGACGUCg -3'
miRNA:   3'- uaCCGaaGGCUGC-GGca---CAUCUGCAG- -5'
16272 5' -55.8 NC_004084.1 + 9366 0.68 0.540682
Target:  5'- -cGGUcacgaucUUCCGAUGCCGUcccGUcccguccaGGACGUCg -3'
miRNA:   3'- uaCCG-------AAGGCUGCGGCA---CA--------UCUGCAG- -5'
16272 5' -55.8 NC_004084.1 + 5799 0.69 0.520525
Target:  5'- cUGGUaUCCGACGCCG-GgcG-UGUCg -3'
miRNA:   3'- uACCGaAGGCUGCGGCaCauCuGCAG- -5'
16272 5' -55.8 NC_004084.1 + 10736 0.7 0.446218
Target:  5'- -cGGUUUCCGGuuggggauccggcuCGCCaGUGgGGGCGUCg -3'
miRNA:   3'- uaCCGAAGGCU--------------GCGG-CACaUCUGCAG- -5'
16272 5' -55.8 NC_004084.1 + 28001 0.7 0.429766
Target:  5'- --cGCUUCCGuCGCCGcccGUcGACGUCg -3'
miRNA:   3'- uacCGAAGGCuGCGGCa--CAuCUGCAG- -5'
16272 5' -55.8 NC_004084.1 + 51401 0.72 0.340715
Target:  5'- gAUGGCggCCGACGCCGUcgAGGCcuUCg -3'
miRNA:   3'- -UACCGaaGGCUGCGGCAcaUCUGc-AG- -5'
16272 5' -55.8 NC_004084.1 + 50092 0.72 0.339076
Target:  5'- -cGGCUggaucauccgcgCCGACGCCGUcUGGACGa- -3'
miRNA:   3'- uaCCGAa-----------GGCUGCGGCAcAUCUGCag -5'
16272 5' -55.8 NC_004084.1 + 17951 0.78 0.136159
Target:  5'- --cGCgUUCGAgGCCGUGUGGACGUCg -3'
miRNA:   3'- uacCGaAGGCUgCGGCACAUCUGCAG- -5'
16272 5' -55.8 NC_004084.1 + 46723 1.08 0.000995
Target:  5'- gAUGGCUUCCGACGCCGUGUAGACGUCg -3'
miRNA:   3'- -UACCGAAGGCUGCGGCACAUCUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.