Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16273 | 3' | -50.8 | NC_004084.1 | + | 50166 | 0.67 | 0.902304 |
Target: 5'- gAUGucGUCagCGGCGUCGAucGUC-UCGACg -3' miRNA: 3'- -UGC--UAGa-GCCGUAGCUu-CAGaAGCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 50605 | 0.72 | 0.649462 |
Target: 5'- aGCGugcCUCcaGCGUCGAGGUCgUCGACg -3' miRNA: 3'- -UGCua-GAGc-CGUAGCUUCAGaAGCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 35132 | 0.75 | 0.463428 |
Target: 5'- uCGAUcCUgGGCGUCGAGGUCcUCGGg -3' miRNA: 3'- uGCUA-GAgCCGUAGCUUCAGaAGCUg -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 46528 | 1.11 | 0.002422 |
Target: 5'- gACGAUCUCGGCAUCGAAGUCUUCGACg -3' miRNA: 3'- -UGCUAGAGCCGUAGCUUCAGAAGCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 7181 | 0.67 | 0.887813 |
Target: 5'- aGCGAUC-CGGaCGUCGAg--CUgcUCGACg -3' miRNA: 3'- -UGCUAGaGCC-GUAGCUucaGA--AGCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 45282 | 0.67 | 0.880154 |
Target: 5'- cCGaAUCgUCGcCGUCGAAGUCUUCGuCc -3' miRNA: 3'- uGC-UAG-AGCcGUAGCUUCAGAAGCuG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 26254 | 0.68 | 0.86404 |
Target: 5'- gGCGucCUCGGCGUUGAucaucGUCUcgugCGACg -3' miRNA: 3'- -UGCuaGAGCCGUAGCUu----CAGAa---GCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 46401 | 0.66 | 0.92787 |
Target: 5'- gACGA--UCGGCGacggCGAAGUUgUUGACg -3' miRNA: 3'- -UGCUagAGCCGUa---GCUUCAGaAGCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 29394 | 0.66 | 0.915663 |
Target: 5'- aACGGUCgggCGGCcacuccuggggcGUCGcGGUUgccgUCGACg -3' miRNA: 3'- -UGCUAGa--GCCG------------UAGCuUCAGa---AGCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 37061 | 0.71 | 0.694261 |
Target: 5'- uCGAuguUCUCGGUGUCGAGGUCcuccUCGuCa -3' miRNA: 3'- uGCU---AGAGCCGUAGCUUCAGa---AGCuG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 51151 | 0.69 | 0.800127 |
Target: 5'- gUGAUCUCGGUGUCGguGUCgcucUCGuCc -3' miRNA: 3'- uGCUAGAGCCGUAGCuuCAGa---AGCuG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 16916 | 0.69 | 0.826982 |
Target: 5'- gGCGAUCguggccgggugcgguUCGGCAUCGgcGggcgucgcgacgucgGGUCUUCGAg -3' miRNA: 3'- -UGCUAG---------------AGCCGUAGC--U---------------UCAGAAGCUg -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 36901 | 0.67 | 0.902304 |
Target: 5'- gGCGAaCUCGGCggCGAAcgUUUCGAa -3' miRNA: 3'- -UGCUaGAGCCGuaGCUUcaGAAGCUg -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 36461 | 0.7 | 0.780046 |
Target: 5'- uCGAUCUCGGCGgagaCGucGUCcUgGACg -3' miRNA: 3'- uGCUAGAGCCGUa---GCuuCAGaAgCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 18774 | 0.67 | 0.902304 |
Target: 5'- cGCGAguucCUCGGCGUCGc-GUacgaUCGACu -3' miRNA: 3'- -UGCUa---GAGCCGUAGCuuCAga--AGCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 632 | 0.69 | 0.828839 |
Target: 5'- gGCGAUCUCGuCGUgGAGcUCcUCGACg -3' miRNA: 3'- -UGCUAGAGCcGUAgCUUcAGaAGCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 39406 | 0.71 | 0.705333 |
Target: 5'- uCGAgCUCGGCGUCGucGUCcucacUCGAUg -3' miRNA: 3'- uGCUaGAGCCGUAGCuuCAGa----AGCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 18095 | 0.74 | 0.55971 |
Target: 5'- gACGAUCUCGGaCGUC-AGGUCgaggUCGGg -3' miRNA: 3'- -UGCUAGAGCC-GUAGcUUCAGa---AGCUg -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 14 | 0.67 | 0.895198 |
Target: 5'- -gGGUCuUCGaaGUCGAGGUCgugUCGGCc -3' miRNA: 3'- ugCUAG-AGCcgUAGCUUCAGa--AGCUG- -5' |
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16273 | 3' | -50.8 | NC_004084.1 | + | 52940 | 0.68 | 0.872228 |
Target: 5'- gACGAUCuggccgUCGGCGUCGucGUgaUCGuCg -3' miRNA: 3'- -UGCUAG------AGCCGUAGCuuCAgaAGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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