miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16274 5' -52.9 NC_004084.1 + 55254 0.66 0.858343
Target:  5'- cGUCGACGA-CGUCuac-GGUCgGCgGCg -3'
miRNA:   3'- -CAGCUGCUaGUAGuaguCCAG-CGgCG- -5'
16274 5' -52.9 NC_004084.1 + 37196 0.66 0.866544
Target:  5'- -aCGAUG-UCGUCAcCGGcuUCGCCGCc -3'
miRNA:   3'- caGCUGCuAGUAGUaGUCc-AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 35904 0.68 0.764721
Target:  5'- --aGGCGAUCGUCGUCgAGGaUGaCGCg -3'
miRNA:   3'- cagCUGCUAGUAGUAG-UCCaGCgGCG- -5'
16274 5' -52.9 NC_004084.1 + 50467 0.67 0.79475
Target:  5'- gGUCGGCGGU-GUCGUUcgccgauguugaGGGUCGggauCCGCg -3'
miRNA:   3'- -CAGCUGCUAgUAGUAG------------UCCAGC----GGCG- -5'
16274 5' -52.9 NC_004084.1 + 36717 0.7 0.668466
Target:  5'- cGUCGACGGUCGccgaCGUCAGcugUGCuCGCa -3'
miRNA:   3'- -CAGCUGCUAGUa---GUAGUCca-GCG-GCG- -5'
16274 5' -52.9 NC_004084.1 + 53716 0.68 0.733455
Target:  5'- uGUCGAUGAUC-UCGUCGgcucGGUCcucgacgaGCUGCu -3'
miRNA:   3'- -CAGCUGCUAGuAGUAGU----CCAG--------CGGCG- -5'
16274 5' -52.9 NC_004084.1 + 17964 0.68 0.754421
Target:  5'- -gUGugGA-CGUCGUCGGuGUCGCCc- -3'
miRNA:   3'- caGCugCUaGUAGUAGUC-CAGCGGcg -5'
16274 5' -52.9 NC_004084.1 + 5761 0.67 0.79475
Target:  5'- -aCGACGAUCucCGUC---UCGCCGCa -3'
miRNA:   3'- caGCUGCUAGuaGUAGuccAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 16683 0.68 0.742946
Target:  5'- cGUCGuccCGAUCGUCAUCcgggacgaucugaAGGUCGaagaccgggaCGCg -3'
miRNA:   3'- -CAGCu--GCUAGUAGUAG-------------UCCAGCg---------GCG- -5'
16274 5' -52.9 NC_004084.1 + 53060 0.67 0.79475
Target:  5'- cGUCGA-GAUCGUCc-CAGuccUCGCCGCc -3'
miRNA:   3'- -CAGCUgCUAGUAGuaGUCc--AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 906 0.68 0.754421
Target:  5'- uGUCGGCG-UCGUCGg-AGuUCGCUGCg -3'
miRNA:   3'- -CAGCUGCuAGUAGUagUCcAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 17918 0.68 0.754421
Target:  5'- --gGGCuGGUCccaccugcagGUCgAUCAGGUCGUCGCg -3'
miRNA:   3'- cagCUG-CUAG----------UAG-UAGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 764 0.65 0.879917
Target:  5'- uUCGACGAaguccguccacgauUCAUCGUCGcccuuguguuGGUCGagGCg -3'
miRNA:   3'- cAGCUGCU--------------AGUAGUAGU----------CCAGCggCG- -5'
16274 5' -52.9 NC_004084.1 + 37024 0.68 0.754421
Target:  5'- aUCGAggcCGGUCAUCGccgccUCAcGGUCGUCGa -3'
miRNA:   3'- cAGCU---GCUAGUAGU-----AGU-CCAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 14035 0.68 0.774883
Target:  5'- cUCGugGA-CAUCGguguUCAGGaggugucgcUCGCCGUu -3'
miRNA:   3'- cAGCugCUaGUAGU----AGUCC---------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 56734 0.68 0.784896
Target:  5'- --gGACGuccuucgCGUCgAUCAGGUCGCC-Cg -3'
miRNA:   3'- cagCUGCua-----GUAG-UAGUCCAGCGGcG- -5'
16274 5' -52.9 NC_004084.1 + 46218 1.12 0.001275
Target:  5'- cGUCGACGAUCAUCAUCAGGUCGCCGCu -3'
miRNA:   3'- -CAGCUGCUAGUAGUAGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 10052 0.7 0.668466
Target:  5'- cGUUGACGAUC-UCGacCGGGaaccagcguugaUCGCCGCc -3'
miRNA:   3'- -CAGCUGCUAGuAGUa-GUCC------------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 1980 0.69 0.701266
Target:  5'- cGUCGA-GAUCGUCGUUccgacGGU-GCCGCu -3'
miRNA:   3'- -CAGCUgCUAGUAGUAGu----CCAgCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 15714 0.69 0.722813
Target:  5'- -aCGGUGAUCGcCGUCuGGUCGUCGUu -3'
miRNA:   3'- caGCUGCUAGUaGUAGuCCAGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.