miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16274 5' -52.9 NC_004084.1 + 57120 0.74 0.405927
Target:  5'- aGUCGAgGA-CGUCcUCGGuGUCGCCGUc -3'
miRNA:   3'- -CAGCUgCUaGUAGuAGUC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 39046 0.73 0.494659
Target:  5'- gGUCGauGCGAUCGggacguugucgaUCAgCAGGUCGCUGUc -3'
miRNA:   3'- -CAGC--UGCUAGU------------AGUaGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 38331 0.71 0.591206
Target:  5'- aUCGACGGUCGUCuUCcGGuUCGCUccgGCg -3'
miRNA:   3'- cAGCUGCUAGUAGuAGuCC-AGCGG---CG- -5'
16274 5' -52.9 NC_004084.1 + 52938 0.74 0.415292
Target:  5'- -gCGACGAUCuggcCGUCGGcGUCGUCGUg -3'
miRNA:   3'- caGCUGCUAGua--GUAGUC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 37934 0.71 0.595605
Target:  5'- cGUCGGCGGgaUCGUCGcguuugaagacgacuUCGccGGUCGCCGa -3'
miRNA:   3'- -CAGCUGCU--AGUAGU---------------AGU--CCAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 46218 1.12 0.001275
Target:  5'- cGUCGACGAUCAUCAUCAGGUCGCCGCu -3'
miRNA:   3'- -CAGCUGCUAGUAGUAGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 54600 0.72 0.536856
Target:  5'- cGUCGACGAagAcuggAUCgAGGUCGCCGUu -3'
miRNA:   3'- -CAGCUGCUagUag--UAG-UCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 50299 0.66 0.849904
Target:  5'- -gCGuCGGUCAUCAgguUCAGGaugCGguCCGCa -3'
miRNA:   3'- caGCuGCUAGUAGU---AGUCCa--GC--GGCG- -5'
16274 5' -52.9 NC_004084.1 + 26169 0.66 0.849904
Target:  5'- aGUCGACGAgaaCGUagucccaacgacCGUCGGcGUCGUCGa -3'
miRNA:   3'- -CAGCUGCUa--GUA------------GUAGUC-CAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 46498 0.66 0.849904
Target:  5'- gGUCG-CGA-CGUCG-CcGGUCGCCGa -3'
miRNA:   3'- -CAGCuGCUaGUAGUaGuCCAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 16650 0.66 0.849904
Target:  5'- cGUCGACG-UCGUC--CGGGagguccUCGUCGCc -3'
miRNA:   3'- -CAGCUGCuAGUAGuaGUCC------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 1412 0.66 0.858343
Target:  5'- -cCGGCGucgcCAUUcUCGGcGUCGCCGUc -3'
miRNA:   3'- caGCUGCua--GUAGuAGUC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 54485 0.66 0.858343
Target:  5'- -aCGGCGGggAUgaUGUCGGGUgCGCCGUa -3'
miRNA:   3'- caGCUGCUagUA--GUAGUCCA-GCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 26483 0.66 0.858343
Target:  5'- -cCGGCGA-CGUUgaGUguGGUCGUCGUc -3'
miRNA:   3'- caGCUGCUaGUAG--UAguCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 36414 0.66 0.858343
Target:  5'- uGUCGAUGuUCGUCcgCGcGUCGUCGa -3'
miRNA:   3'- -CAGCUGCuAGUAGuaGUcCAGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 55254 0.66 0.858343
Target:  5'- cGUCGACGA-CGUCuac-GGUCgGCgGCg -3'
miRNA:   3'- -CAGCUGCUaGUAGuaguCCAG-CGgCG- -5'
16274 5' -52.9 NC_004084.1 + 37196 0.66 0.866544
Target:  5'- -aCGAUG-UCGUCAcCGGcuUCGCCGCc -3'
miRNA:   3'- caGCUGCuAGUAGUaGUCc-AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 764 0.65 0.879917
Target:  5'- uUCGACGAaguccguccacgauUCAUCGUCGcccuuguguuGGUCGagGCg -3'
miRNA:   3'- cAGCUGCU--------------AGUAGUAGU----------CCAGCggCG- -5'
16274 5' -52.9 NC_004084.1 + 42041 0.73 0.494659
Target:  5'- gGUCGAC-AUCGUCAUUAGGgucugugCGCCa- -3'
miRNA:   3'- -CAGCUGcUAGUAGUAGUCCa------GCGGcg -5'
16274 5' -52.9 NC_004084.1 + 35696 0.72 0.536856
Target:  5'- --gGGCGGaCuUCGUCGGGUCGCuCGCc -3'
miRNA:   3'- cagCUGCUaGuAGUAGUCCAGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.