miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16274 5' -52.9 NC_004084.1 + 55382 0.66 0.838589
Target:  5'- -gUGGCGAUCAUCGccguauucgccacgUCGGGgaCGCUGUc -3'
miRNA:   3'- caGCUGCUAGUAGU--------------AGUCCa-GCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 16124 0.67 0.832342
Target:  5'- cGUCGcCGAUCGUgAaCGGGUgaCCGCg -3'
miRNA:   3'- -CAGCuGCUAGUAgUaGUCCAgcGGCG- -5'
16274 5' -52.9 NC_004084.1 + 18854 0.67 0.813931
Target:  5'- cGUCGACGGUCccgGUCGaGUCGaUCGCg -3'
miRNA:   3'- -CAGCUGCUAGuagUAGUcCAGC-GGCG- -5'
16274 5' -52.9 NC_004084.1 + 4037 0.67 0.813931
Target:  5'- -aCGGCGAUCG-CGUCAGaGUgaucUGCCGa -3'
miRNA:   3'- caGCUGCUAGUaGUAGUC-CA----GCGGCg -5'
16274 5' -52.9 NC_004084.1 + 36074 0.67 0.813931
Target:  5'- -aCGACGAggaCcgCGaCgAGGUCGCCGUc -3'
miRNA:   3'- caGCUGCUa--GuaGUaG-UCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 29145 0.67 0.813931
Target:  5'- uGUCGGCGGUgcUgGUguGGUCG-CGCg -3'
miRNA:   3'- -CAGCUGCUAguAgUAguCCAGCgGCG- -5'
16274 5' -52.9 NC_004084.1 + 23118 0.67 0.811101
Target:  5'- -cCGACGAaCGUCAgCAGGcucucgcgcugacuUCGCCGa -3'
miRNA:   3'- caGCUGCUaGUAGUaGUCC--------------AGCGGCg -5'
16274 5' -52.9 NC_004084.1 + 46549 0.67 0.808254
Target:  5'- uUCGACguccgGAUCGUCGUCGGucgugaacucgauaUCGCCGUc -3'
miRNA:   3'- cAGCUG-----CUAGUAGUAGUCc-------------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 41270 0.67 0.804431
Target:  5'- -cCGGCGAUCGUCcccAUCAGuGaacCGCCGa -3'
miRNA:   3'- caGCUGCUAGUAG---UAGUC-Ca--GCGGCg -5'
16274 5' -52.9 NC_004084.1 + 49339 0.67 0.804431
Target:  5'- aUCGGCGAUCGU-GUCgAGGUgaucgucgaCGUCGCc -3'
miRNA:   3'- cAGCUGCUAGUAgUAG-UCCA---------GCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 10893 0.67 0.804431
Target:  5'- -aUGGCGAUCGUCGgguacucccgaUCGGGgaguUCGUCGUc -3'
miRNA:   3'- caGCUGCUAGUAGU-----------AGUCC----AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 18704 0.67 0.803471
Target:  5'- cGUCGACGG-CGUCGUCgccgucacuggcGGGUUcggucgaGCCGUu -3'
miRNA:   3'- -CAGCUGCUaGUAGUAG------------UCCAG-------CGGCG- -5'
16274 5' -52.9 NC_004084.1 + 50467 0.67 0.79475
Target:  5'- gGUCGGCGGU-GUCGUUcgccgauguugaGGGUCGggauCCGCg -3'
miRNA:   3'- -CAGCUGCUAgUAGUAG------------UCCAGC----GGCG- -5'
16274 5' -52.9 NC_004084.1 + 5761 0.67 0.79475
Target:  5'- -aCGACGAUCucCGUC---UCGCCGCa -3'
miRNA:   3'- caGCUGCUAGuaGUAGuccAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 53060 0.67 0.79475
Target:  5'- cGUCGA-GAUCGUCc-CAGuccUCGCCGCc -3'
miRNA:   3'- -CAGCUgCUAGUAGuaGUCc--AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 56734 0.68 0.784896
Target:  5'- --gGACGuccuucgCGUCgAUCAGGUCGCC-Cg -3'
miRNA:   3'- cagCUGCua-----GUAG-UAGUCCAGCGGcG- -5'
16274 5' -52.9 NC_004084.1 + 29223 0.68 0.783902
Target:  5'- cGUCGACG-UUGUUcgCGGGcgaguacUCGUCGCg -3'
miRNA:   3'- -CAGCUGCuAGUAGuaGUCC-------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 14035 0.68 0.774883
Target:  5'- cUCGugGA-CAUCGguguUCAGGaggugucgcUCGCCGUu -3'
miRNA:   3'- cAGCugCUaGUAGU----AGUCC---------AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 35904 0.68 0.764721
Target:  5'- --aGGCGAUCGUCGUCgAGGaUGaCGCg -3'
miRNA:   3'- cagCUGCUAGUAGUAG-UCCaGCgGCG- -5'
16274 5' -52.9 NC_004084.1 + 37024 0.68 0.754421
Target:  5'- aUCGAggcCGGUCAUCGccgccUCAcGGUCGUCGa -3'
miRNA:   3'- cAGCU---GCUAGUAGU-----AGU-CCAGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.