miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16275 3' -49.7 NC_004084.1 + 13029 0.66 0.961856
Target:  5'- -aCACCUucacgaccggaCGAUcgACACGCUgACGaUUCg -3'
miRNA:   3'- gaGUGGA-----------GCUAa-UGUGCGAgUGC-AAG- -5'
16275 3' -49.7 NC_004084.1 + 36606 0.66 0.955336
Target:  5'- cCUCACCgUCGAcgcugacguugaggUGCAUcgGCUCGCGaUCg -3'
miRNA:   3'- -GAGUGG-AGCUa-------------AUGUG--CGAGUGCaAG- -5'
16275 3' -49.7 NC_004084.1 + 56453 0.66 0.949043
Target:  5'- --gAUCUCGAcgGCGCGCUCuCGgUCu -3'
miRNA:   3'- gagUGGAGCUaaUGUGCGAGuGCaAG- -5'
16275 3' -49.7 NC_004084.1 + 10292 0.67 0.946175
Target:  5'- gCUCACCgugacgaCGAccggccgcaacuacgUUGCugGCcUCugGUUCg -3'
miRNA:   3'- -GAGUGGa------GCU---------------AAUGugCG-AGugCAAG- -5'
16275 3' -49.7 NC_004084.1 + 28401 0.67 0.933653
Target:  5'- uUCGCgUCGAUgcgaACGCUgACGUcgUCa -3'
miRNA:   3'- gAGUGgAGCUAaug-UGCGAgUGCA--AG- -5'
16275 3' -49.7 NC_004084.1 + 45559 0.67 0.933653
Target:  5'- --gACCUCGAagcggagUACGCcgacggGUUCGCGUUCa -3'
miRNA:   3'- gagUGGAGCUa------AUGUG------CGAGUGCAAG- -5'
16275 3' -49.7 NC_004084.1 + 10817 0.67 0.933095
Target:  5'- -cCACCUCGAgaucUUGugagagucgccacCGCGCUCGCGa-- -3'
miRNA:   3'- gaGUGGAGCU----AAU-------------GUGCGAGUGCaag -5'
16275 3' -49.7 NC_004084.1 + 55665 0.67 0.932533
Target:  5'- -cCACCUCGuugaugaccugUGCGuuccucugcCGCUCugGUUCg -3'
miRNA:   3'- gaGUGGAGCua---------AUGU---------GCGAGugCAAG- -5'
16275 3' -49.7 NC_004084.1 + 55615 0.67 0.927935
Target:  5'- uCUCgGCCUCGGcgucuggUACACGCUCGaGUg- -3'
miRNA:   3'- -GAG-UGGAGCUa------AUGUGCGAGUgCAag -5'
16275 3' -49.7 NC_004084.1 + 54849 0.67 0.927935
Target:  5'- --gACCUUGAUUcGCGCGUUCACa--- -3'
miRNA:   3'- gagUGGAGCUAA-UGUGCGAGUGcaag -5'
16275 3' -49.7 NC_004084.1 + 46676 0.67 0.921922
Target:  5'- gUCGCCUCGAggaccaugACGCGC-CACuGcUCa -3'
miRNA:   3'- gAGUGGAGCUaa------UGUGCGaGUG-CaAG- -5'
16275 3' -49.7 NC_004084.1 + 36257 0.68 0.915613
Target:  5'- -aCGuCCUCGAgUGCgccgagGCGCUCGCGgUCa -3'
miRNA:   3'- gaGU-GGAGCUaAUG------UGCGAGUGCaAG- -5'
16275 3' -49.7 NC_004084.1 + 29195 0.68 0.915613
Target:  5'- aCUCGCCcgCGAacaacgucgACGCGCUCugGa-- -3'
miRNA:   3'- -GAGUGGa-GCUaa-------UGUGCGAGugCaag -5'
16275 3' -49.7 NC_004084.1 + 7872 0.69 0.863415
Target:  5'- -aCACCUCGAUcgcccgGCGaagcUGCUCGCGaUCg -3'
miRNA:   3'- gaGUGGAGCUAa-----UGU----GCGAGUGCaAG- -5'
16275 3' -49.7 NC_004084.1 + 35115 0.69 0.854872
Target:  5'- -gCGCuCUCGGUcACGCGCUCGCu--- -3'
miRNA:   3'- gaGUG-GAGCUAaUGUGCGAGUGcaag -5'
16275 3' -49.7 NC_004084.1 + 1013 0.7 0.83337
Target:  5'- gCUCGCCggcgacgucgacgCGAUcggggGCGCGCUCGaGUUCg -3'
miRNA:   3'- -GAGUGGa------------GCUAa----UGUGCGAGUgCAAG- -5'
16275 3' -49.7 NC_004084.1 + 1814 0.7 0.808611
Target:  5'- aCUCGCCgacCGGcgACgACGC-CGCGUUCa -3'
miRNA:   3'- -GAGUGGa--GCUaaUG-UGCGaGUGCAAG- -5'
16275 3' -49.7 NC_004084.1 + 693 0.71 0.76798
Target:  5'- -aCGuCCUCGAgcggUGCACGCacugUGCGUUCa -3'
miRNA:   3'- gaGU-GGAGCUa---AUGUGCGa---GUGCAAG- -5'
16275 3' -49.7 NC_004084.1 + 33036 0.73 0.657709
Target:  5'- gCUCgACCUCGAcugACucgGCGCUCACGUc- -3'
miRNA:   3'- -GAG-UGGAGCUaa-UG---UGCGAGUGCAag -5'
16275 3' -49.7 NC_004084.1 + 484 0.73 0.634961
Target:  5'- gUCGCCUCGAUccUGCugGCgCA-GUUCa -3'
miRNA:   3'- gAGUGGAGCUA--AUGugCGaGUgCAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.