Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 8229 | 0.67 | 0.940152 |
Target: 5'- cGGUUGCaGAGGGCGaCGUCGagacgaUCGaCGCc -3' miRNA: 3'- -CCAGUG-CUUCUGCaGCAGU------AGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 31349 | 0.67 | 0.929474 |
Target: 5'- -uUCGuCGucGACGUCGagCAUCG-CGCg -3' miRNA: 3'- ccAGU-GCuuCUGCAGCa-GUAGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 39084 | 0.67 | 0.923126 |
Target: 5'- uGUCGCGcuugaguGAGAcagucgccCGUCGaUCGUCGUCGa -3' miRNA: 3'- cCAGUGC-------UUCU--------GCAGC-AGUAGCAGCg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 39592 | 0.67 | 0.923717 |
Target: 5'- aGGUCcCGGGcGCGcUUGUCuggCGUCGCc -3' miRNA: 3'- -CCAGuGCUUcUGC-AGCAGua-GCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 46287 | 0.67 | 0.92891 |
Target: 5'- cGUCgACGGAGuCGUaGUCGUCGacguugacuccguUCGCg -3' miRNA: 3'- cCAG-UGCUUCuGCAgCAGUAGC-------------AGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 18695 | 0.67 | 0.92891 |
Target: 5'- cGUCAuccucguCGAcGGCGUCGUCGcCGUCa- -3' miRNA: 3'- cCAGU-------GCUuCUGCAGCAGUaGCAGcg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 13767 | 0.67 | 0.932794 |
Target: 5'- aGGUCGCGcuGGGCGggcucggagaucgCGUCcgguUgGUCGCg -3' miRNA: 3'- -CCAGUGCu-UCUGCa------------GCAGu---AgCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 9255 | 0.67 | 0.940152 |
Target: 5'- cGUCuCGggGuCGUCGuUCGUgaacgcaucgaaCGUCGCc -3' miRNA: 3'- cCAGuGCuuCuGCAGC-AGUA------------GCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 35443 | 0.67 | 0.940152 |
Target: 5'- aGGUCgACcAGGACucgGUCGgCcUCGUCGCg -3' miRNA: 3'- -CCAG-UGcUUCUG---CAGCaGuAGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 21241 | 0.67 | 0.940152 |
Target: 5'- cGGUCuucuCGAuGAUGUCGaaCGccccgagcUCGUCGCg -3' miRNA: 3'- -CCAGu---GCUuCUGCAGCa-GU--------AGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 48417 | 0.67 | 0.940152 |
Target: 5'- -aUCuCGGAGAucuuCGUCGaCGUCGUCGg -3' miRNA: 3'- ccAGuGCUUCU----GCAGCaGUAGCAGCg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 26678 | 0.67 | 0.923717 |
Target: 5'- cGGUCugaGAGGAgG-CGaCAUCGUCGa -3' miRNA: 3'- -CCAGug-CUUCUgCaGCaGUAGCAGCg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29220 | 0.67 | 0.923717 |
Target: 5'- --gCGCGucGACGUUGuUCGcgggcgaguacUCGUCGCg -3' miRNA: 3'- ccaGUGCuuCUGCAGC-AGU-----------AGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 47989 | 0.68 | 0.890788 |
Target: 5'- cGGgaugCACGAGGACGUCGacugCGagaUgGUCGa -3' miRNA: 3'- -CCa---GUGCUUCUGCAGCa---GU---AgCAGCg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29696 | 0.68 | 0.920129 |
Target: 5'- cGGUCGCGGacgcuguccuggcugAGucGCGUCGUCuggcCGUcCGCc -3' miRNA: 3'- -CCAGUGCU---------------UC--UGCAGCAGua--GCA-GCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 5473 | 0.68 | 0.911369 |
Target: 5'- -aUCACGAcGACGcCGaCGgccagaUCGUCGCa -3' miRNA: 3'- ccAGUGCUuCUGCaGCaGU------AGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29063 | 0.68 | 0.917681 |
Target: 5'- aGGcCGCGAccgcccgcucGGGgG-CGUCGUCGcCGCg -3' miRNA: 3'- -CCaGUGCU----------UCUgCaGCAGUAGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 19731 | 0.68 | 0.90478 |
Target: 5'- uGGUgGCGAGGAC----UCcUCGUCGCu -3' miRNA: 3'- -CCAgUGCUUCUGcagcAGuAGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 52655 | 0.68 | 0.897919 |
Target: 5'- cGGcUGCGGcgAGACGgagaUCGUCGUCGagGCg -3' miRNA: 3'- -CCaGUGCU--UCUGC----AGCAGUAGCagCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 34696 | 0.68 | 0.897919 |
Target: 5'- uGUCGCGcuGGGGUGUCGUCcuuuccgggCGUCGCc -3' miRNA: 3'- cCAGUGC--UUCUGCAGCAGua-------GCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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