Results 61 - 80 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 29063 | 0.68 | 0.917681 |
Target: 5'- aGGcCGCGAccgcccgcucGGGgG-CGUCGUCGcCGCg -3' miRNA: 3'- -CCaGUGCU----------UCUgCaGCAGUAGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 5473 | 0.68 | 0.911369 |
Target: 5'- -aUCACGAcGACGcCGaCGgccagaUCGUCGCa -3' miRNA: 3'- ccAGUGCUuCUGCaGCaGU------AGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 19731 | 0.68 | 0.90478 |
Target: 5'- uGGUgGCGAGGAC----UCcUCGUCGCu -3' miRNA: 3'- -CCAgUGCUUCUGcagcAGuAGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 52655 | 0.68 | 0.897919 |
Target: 5'- cGGcUGCGGcgAGACGgagaUCGUCGUCGagGCg -3' miRNA: 3'- -CCaGUGCU--UCUGC----AGCAGUAGCagCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 34696 | 0.68 | 0.897919 |
Target: 5'- uGUCGCGcuGGGGUGUCGUCcuuuccgggCGUCGCc -3' miRNA: 3'- cCAGUGC--UUCUGCAGCAGua-------GCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 869 | 0.68 | 0.90478 |
Target: 5'- aGUCAguCGucGACGUCGcCGUCGgaaucgguaUCGCu -3' miRNA: 3'- cCAGU--GCuuCUGCAGCaGUAGC---------AGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 762 | 0.68 | 0.890788 |
Target: 5'- cGUUcgACGAAGucCGUCcacgauUCAUCGUCGCc -3' miRNA: 3'- cCAG--UGCUUCu-GCAGc-----AGUAGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 36552 | 0.68 | 0.90478 |
Target: 5'- cGGUaucgacgACGGAGAUGaacUCGUCGUCGCc -3' miRNA: 3'- -CCAg------UGCUUCUGCagcAGUAGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 54576 | 0.68 | 0.911369 |
Target: 5'- aGGUUccggUGGAGcCGUCGUCggCGUCGa -3' miRNA: 3'- -CCAGu---GCUUCuGCAGCAGuaGCAGCg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 36111 | 0.68 | 0.917681 |
Target: 5'- cGUC-CGgcGGCGuaUCGUCAUCGccgaaCGCg -3' miRNA: 3'- cCAGuGCuuCUGC--AGCAGUAGCa----GCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 57116 | 0.67 | 0.929474 |
Target: 5'- -aUCcaguCGAGGACGUCcUCggUGUCGCc -3' miRNA: 3'- ccAGu---GCUUCUGCAGcAGuaGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 13767 | 0.67 | 0.932794 |
Target: 5'- aGGUCGCGcuGGGCGggcucggagaucgCGUCcgguUgGUCGCg -3' miRNA: 3'- -CCAGUGCu-UCUGCa------------GCAGu---AgCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 39084 | 0.67 | 0.923126 |
Target: 5'- uGUCGCGcuugaguGAGAcagucgccCGUCGaUCGUCGUCGa -3' miRNA: 3'- cCAGUGC-------UUCU--------GCAGC-AGUAGCAGCg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 39592 | 0.67 | 0.923717 |
Target: 5'- aGGUCcCGGGcGCGcUUGUCuggCGUCGCc -3' miRNA: 3'- -CCAGuGCUUcUGC-AGCAGua-GCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 46287 | 0.67 | 0.92891 |
Target: 5'- cGUCgACGGAGuCGUaGUCGUCGacguugacuccguUCGCg -3' miRNA: 3'- cCAG-UGCUUCuGCAgCAGUAGC-------------AGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29579 | 0.67 | 0.940152 |
Target: 5'- -aUCGcCGGguGGGCGUCGUUcgCG-CGCa -3' miRNA: 3'- ccAGU-GCU--UCUGCAGCAGuaGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 4496 | 0.67 | 0.944596 |
Target: 5'- --aCACGAaacugcaGGAUGUCGagAUCGccUCGCa -3' miRNA: 3'- ccaGUGCU-------UCUGCAGCagUAGC--AGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 1356 | 0.67 | 0.945076 |
Target: 5'- --cCACGGgcGGAcCGUCGUgAUCGggaCGCg -3' miRNA: 3'- ccaGUGCU--UCU-GCAGCAgUAGCa--GCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 18695 | 0.67 | 0.92891 |
Target: 5'- cGUCAuccucguCGAcGGCGUCGUCGcCGUCa- -3' miRNA: 3'- cCAGU-------GCUuCUGCAGCAGUaGCAGcg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 35443 | 0.67 | 0.940152 |
Target: 5'- aGGUCgACcAGGACucgGUCGgCcUCGUCGCg -3' miRNA: 3'- -CCAG-UGcUUCUG---CAGCaGuAGCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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