#
miRNA: 3'- -CCagUGCUucUGCAGC-AGUAGCaGCG- -5'
miRNA: 3'- cCAG---UGCUU----CUGCAGCAGU------------AGCaGCG- -5'
miRNA: 3'- cCAGUg---CUUCUG----CAGCAGUaGCAGCg -5'
Results 101 - 103 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
|
P value |
| Predicted miRNA align pattern | |||||||
| 16276 | 5' | -50.5 | NC_004084.1 | + | 13330 | 0.66 | 0.954108 |
|
Target: 5'- cGGagACGAucAUGUCGuUCAUCG-CGCc -3' miRNA: 3'- -CCagUGCUucUGCAGC-AGUAGCaGCG- -5' |
|||||||
| 16276 | 5' | -50.5 | NC_004084.1 | + | 28405 | 0.66 | 0.954108 |
|
Target: 5'- cGUCgauGCGAAcgcuGACGUCGUCAccagcgaccaggUCGaCGCc -3' miRNA: 3'- cCAG---UGCUU----CUGCAGCAGU------------AGCaGCG- -5' |
|||||||
| 16276 | 5' | -50.5 | NC_004084.1 | + | 7476 | 0.66 | 0.958224 |
|
Target: 5'- cGUCGaggaGGAGAUcaggGUCGUCGaCGUCGa -3' miRNA: 3'- cCAGUg---CUUCUG----CAGCAGUaGCAGCg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home