Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 26121 | 0.69 | 0.867828 |
Target: 5'- cGGUCGCGAcGAuCG-CGUUGUCGgugaGCa -3' miRNA: 3'- -CCAGUGCUuCU-GCaGCAGUAGCag--CG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 26447 | 0.75 | 0.560388 |
Target: 5'- -aUCACGAGGACGUCGUUcccgagcugGUUGagCGCg -3' miRNA: 3'- ccAGUGCUUCUGCAGCAG---------UAGCa-GCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 26678 | 0.67 | 0.923717 |
Target: 5'- cGGUCugaGAGGAgG-CGaCAUCGUCGa -3' miRNA: 3'- -CCAGug-CUUCUgCaGCaGUAGCAGCg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 27972 | 0.69 | 0.851276 |
Target: 5'- cGUCcccaGCG-GGACGUCGUCcUCGccaUCGCu -3' miRNA: 3'- cCAG----UGCuUCUGCAGCAGuAGC---AGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 28405 | 0.66 | 0.954108 |
Target: 5'- cGUCgauGCGAAcgcuGACGUCGUCAccagcgaccaggUCGaCGCc -3' miRNA: 3'- cCAG---UGCUU----CUGCAGCAGU------------AGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 28653 | 0.71 | 0.796359 |
Target: 5'- cGUCGCGAugcaGGACG--GUCAUCGucUCGCc -3' miRNA: 3'- cCAGUGCU----UCUGCagCAGUAGC--AGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29063 | 0.68 | 0.917681 |
Target: 5'- aGGcCGCGAccgcccgcucGGGgG-CGUCGUCGcCGCg -3' miRNA: 3'- -CCaGUGCU----------UCUgCaGCAGUAGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29220 | 0.67 | 0.923717 |
Target: 5'- --gCGCGucGACGUUGuUCGcgggcgaguacUCGUCGCg -3' miRNA: 3'- ccaGUGCuuCUGCAGC-AGU-----------AGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29579 | 0.67 | 0.940152 |
Target: 5'- -aUCGcCGGguGGGCGUCGUUcgCG-CGCa -3' miRNA: 3'- ccAGU-GCU--UCUGCAGCAGuaGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29696 | 0.68 | 0.920129 |
Target: 5'- cGGUCGCGGacgcuguccuggcugAGucGCGUCGUCuggcCGUcCGCc -3' miRNA: 3'- -CCAGUGCU---------------UC--UGCAGCAGua--GCA-GCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 30001 | 0.71 | 0.766429 |
Target: 5'- uGGUCGCuGguGACGaCGUCAgCGuUCGCa -3' miRNA: 3'- -CCAGUG-CuuCUGCaGCAGUaGC-AGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 30037 | 0.7 | 0.806005 |
Target: 5'- aGGUCucGCGggGGCcgcUCG-CGUCGUUGUg -3' miRNA: 3'- -CCAG--UGCuuCUGc--AGCaGUAGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 30914 | 0.76 | 0.507005 |
Target: 5'- uGGUccucCugGAAGACGUCGaUCGcUCGUCGa -3' miRNA: 3'- -CCA----GugCUUCUGCAGC-AGU-AGCAGCg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 31188 | 0.71 | 0.766429 |
Target: 5'- uGG-CugGGgaacAGcGCGUCGaCGUCGUCGCg -3' miRNA: 3'- -CCaGugCU----UC-UGCAGCaGUAGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 31343 | 0.69 | 0.867828 |
Target: 5'- cGUCGCGAuGGCgGUCGgaaaguUCGUUGCu -3' miRNA: 3'- cCAGUGCUuCUG-CAGCagu---AGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 31349 | 0.67 | 0.929474 |
Target: 5'- -uUCGuCGucGACGUCGagCAUCG-CGCg -3' miRNA: 3'- ccAGU-GCuuCUGCAGCa-GUAGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 31491 | 0.7 | 0.815467 |
Target: 5'- uGGUCugGuuucaaccaguGGACuUCGUCcgCGUUGCu -3' miRNA: 3'- -CCAGugCu----------UCUGcAGCAGuaGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 32412 | 0.7 | 0.842649 |
Target: 5'- cGGUCcCGucGACGagcUCG-CAcUCGUCGCg -3' miRNA: 3'- -CCAGuGCuuCUGC---AGCaGU-AGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 33258 | 0.73 | 0.648341 |
Target: 5'- aGGaCGuCGAGGACGUCGUCAgcUCGUUc- -3' miRNA: 3'- -CCaGU-GCUUCUGCAGCAGU--AGCAGcg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 34696 | 0.68 | 0.897919 |
Target: 5'- uGUCGCGcuGGGGUGUCGUCcuuuccgggCGUCGCc -3' miRNA: 3'- cCAGUGC--UUCUGCAGCAGua-------GCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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