miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 34722 0.66 0.962079
Target:  5'- cGUCugGGAGACGcucaccgCGUcCAUUGcCGUc -3'
miRNA:   3'- cCAGugCUUCUGCa------GCA-GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 34836 0.66 0.958224
Target:  5'- ---gGCGGAGcACGaCGUCGUCGUacgagaCGCa -3'
miRNA:   3'- ccagUGCUUC-UGCaGCAGUAGCA------GCG- -5'
16276 5' -50.5 NC_004084.1 + 35335 0.71 0.786541
Target:  5'- aGGUCGCc--GACGUCcaCcUCGUCGCg -3'
miRNA:   3'- -CCAGUGcuuCUGCAGcaGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 35404 0.74 0.604174
Target:  5'- -aUCACGAccGACGg-GUCAUCGUCGUc -3'
miRNA:   3'- ccAGUGCUu-CUGCagCAGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 35443 0.67 0.940152
Target:  5'- aGGUCgACcAGGACucgGUCGgCcUCGUCGCg -3'
miRNA:   3'- -CCAG-UGcUUCUG---CAGCaGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 35887 0.74 0.637297
Target:  5'- cGGUCGucuucggcCGGAGGCGaUCGUCGUCGaggaugaCGCg -3'
miRNA:   3'- -CCAGU--------GCUUCUGC-AGCAGUAGCa------GCG- -5'
16276 5' -50.5 NC_004084.1 + 36111 0.68 0.917681
Target:  5'- cGUC-CGgcGGCGuaUCGUCAUCGccgaaCGCg -3'
miRNA:   3'- cCAGuGCuuCUGC--AGCAGUAGCa----GCG- -5'
16276 5' -50.5 NC_004084.1 + 36469 0.7 0.824735
Target:  5'- ---gGCGGAGACGUCGUCcUgGaCGCc -3'
miRNA:   3'- ccagUGCUUCUGCAGCAGuAgCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 36552 0.68 0.90478
Target:  5'- cGGUaucgacgACGGAGAUGaacUCGUCGUCGCc -3'
miRNA:   3'- -CCAg------UGCUUCUGCagcAGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 37908 0.77 0.465909
Target:  5'- cGGUCucuucguCGAucuGAUGUCGUCGucggcgggaUCGUCGCg -3'
miRNA:   3'- -CCAGu------GCUu--CUGCAGCAGU---------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 38443 0.66 0.962079
Target:  5'- --aCGCGc-GACGUCGaCGUCGUCa- -3'
miRNA:   3'- ccaGUGCuuCUGCAGCaGUAGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 38850 0.79 0.362832
Target:  5'- uGGUCugG--GACGUCGUCcUCGUCGa -3'
miRNA:   3'- -CCAGugCuuCUGCAGCAGuAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 39045 0.73 0.681343
Target:  5'- aGGUCgauGCGAucgGGACGUUGUCgAUCagcagGUCGCu -3'
miRNA:   3'- -CCAG---UGCU---UCUGCAGCAG-UAG-----CAGCG- -5'
16276 5' -50.5 NC_004084.1 + 39084 0.67 0.923126
Target:  5'- uGUCGCGcuugaguGAGAcagucgccCGUCGaUCGUCGUCGa -3'
miRNA:   3'- cCAGUGC-------UUCU--------GCAGC-AGUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 39260 0.72 0.724629
Target:  5'- cGG-CGgGAagauGGugGUCGUCGaucgCGUCGCg -3'
miRNA:   3'- -CCaGUgCU----UCugCAGCAGUa---GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 39592 0.67 0.923717
Target:  5'- aGGUCcCGGGcGCGcUUGUCuggCGUCGCc -3'
miRNA:   3'- -CCAGuGCUUcUGC-AGCAGua-GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 42026 0.73 0.670375
Target:  5'- cGUCGCGAgcgAGGCgGUCGaCAUCGUCa- -3'
miRNA:   3'- cCAGUGCU---UCUG-CAGCaGUAGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 44933 0.79 0.370653
Target:  5'- aGGUgACGAuGACGuUCGUCGacgagaacggcguUCGUCGCg -3'
miRNA:   3'- -CCAgUGCUuCUGC-AGCAGU-------------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 45398 0.67 0.945076
Target:  5'- cGGUCGUGAAGGUGUUGcUCGagGUCGUc -3'
miRNA:   3'- -CCAGUGCUUCUGCAGC-AGUagCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 45486 1.15 0.00202
Target:  5'- cGGUCACGAAGACGUCGUCAUCGUCGCc -3'
miRNA:   3'- -CCAGUGCUUCUGCAGCAGUAGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.