miRNA display CGI


Results 81 - 100 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 45732 0.72 0.745761
Target:  5'- cGGuUCACucGGucaACGUCGUCGUCGUCcCa -3'
miRNA:   3'- -CC-AGUGcuUC---UGCAGCAGUAGCAGcG- -5'
16276 5' -50.5 NC_004084.1 + 45868 0.73 0.692263
Target:  5'- cGGUgaACGG-GACGUCGUCGUCGcUCa- -3'
miRNA:   3'- -CCAg-UGCUuCUGCAGCAGUAGC-AGcg -5'
16276 5' -50.5 NC_004084.1 + 46190 0.68 0.90478
Target:  5'- uGGUagGCGGcgAGAuCGUCGUCGgaugCGUCGa -3'
miRNA:   3'- -CCAg-UGCU--UCU-GCAGCAGUa---GCAGCg -5'
16276 5' -50.5 NC_004084.1 + 46287 0.67 0.92891
Target:  5'- cGUCgACGGAGuCGUaGUCGUCGacguugacuccguUCGCg -3'
miRNA:   3'- cCAG-UGCUUCuGCAgCAGUAGC-------------AGCG- -5'
16276 5' -50.5 NC_004084.1 + 47989 0.68 0.890788
Target:  5'- cGGgaugCACGAGGACGUCGacugCGagaUgGUCGa -3'
miRNA:   3'- -CCa---GUGCUUCUGCAGCa---GU---AgCAGCg -5'
16276 5' -50.5 NC_004084.1 + 48386 0.7 0.815467
Target:  5'- aGGUCAcCGucGACG-CGgCAUCGUgGCc -3'
miRNA:   3'- -CCAGU-GCuuCUGCaGCaGUAGCAgCG- -5'
16276 5' -50.5 NC_004084.1 + 48417 0.67 0.940152
Target:  5'- -aUCuCGGAGAucuuCGUCGaCGUCGUCGg -3'
miRNA:   3'- ccAGuGCUUCU----GCAGCaGUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 48978 0.66 0.962079
Target:  5'- cGUCuuCGucGACGUCGcggccCAUCG-CGCg -3'
miRNA:   3'- cCAGu-GCuuCUGCAGCa----GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 49805 0.77 0.465909
Target:  5'- -aUCGCGAAGuCGUCGUCGcCG-CGCa -3'
miRNA:   3'- ccAGUGCUUCuGCAGCAGUaGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 50152 0.82 0.236995
Target:  5'- aGGUCGuuguCGAGGAUGUCGUCAgcggCGUCGa -3'
miRNA:   3'- -CCAGU----GCUUCUGCAGCAGUa---GCAGCg -5'
16276 5' -50.5 NC_004084.1 + 50595 0.7 0.815467
Target:  5'- cGGaUCugGGAGcgugccuccaGCGUCGagGUCGUCGa -3'
miRNA:   3'- -CC-AGugCUUC----------UGCAGCagUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 52655 0.68 0.897919
Target:  5'- cGGcUGCGGcgAGACGgagaUCGUCGUCGagGCg -3'
miRNA:   3'- -CCaGUGCU--UCUGC----AGCAGUAGCagCG- -5'
16276 5' -50.5 NC_004084.1 + 52947 0.76 0.507005
Target:  5'- uGG-C-CGucGGCGUCGUCGugaUCGUCGCg -3'
miRNA:   3'- -CCaGuGCuuCUGCAGCAGU---AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 53197 0.66 0.962079
Target:  5'- cGUCGCGAcuggaagcAGcACGUCGagucgCAcCGUCGUg -3'
miRNA:   3'- cCAGUGCU--------UC-UGCAGCa----GUaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 54576 0.68 0.911369
Target:  5'- aGGUUccggUGGAGcCGUCGUCggCGUCGa -3'
miRNA:   3'- -CCAGu---GCUUCuGCAGCAGuaGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 54614 0.66 0.962079
Target:  5'- aGUCAuCGgcGGCGUCacGUaucgaAUCGUCGUc -3'
miRNA:   3'- cCAGU-GCuuCUGCAG--CAg----UAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 54826 0.8 0.3215
Target:  5'- cGUCugGAGGACGuUCGUCGcgGUCGCc -3'
miRNA:   3'- cCAGugCUUCUGC-AGCAGUagCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 56554 0.74 0.626247
Target:  5'- aGUC-CaGGAGGCGaCGUCGUCcGUCGCg -3'
miRNA:   3'- cCAGuG-CUUCUGCaGCAGUAG-CAGCG- -5'
16276 5' -50.5 NC_004084.1 + 56922 0.69 0.875737
Target:  5'- cGUCGgGAcggcGGACuucguaGUCGUCGUCGgCGCu -3'
miRNA:   3'- cCAGUgCU----UCUG------CAGCAGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 56937 0.69 0.883392
Target:  5'- cGUCuACcAGGAgGUCGUCgAUCGcCGCa -3'
miRNA:   3'- cCAG-UGcUUCUgCAGCAG-UAGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.