miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 762 0.68 0.890788
Target:  5'- cGUUcgACGAAGucCGUCcacgauUCAUCGUCGCc -3'
miRNA:   3'- cCAG--UGCUUCu-GCAGc-----AGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 15709 0.69 0.883392
Target:  5'- cGGUgACGguGAuCGcCGUCugGUCGUCGUu -3'
miRNA:   3'- -CCAgUGCuuCU-GCaGCAG--UAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 56922 0.69 0.875737
Target:  5'- cGUCGgGAcggcGGACuucguaGUCGUCGUCGgCGCu -3'
miRNA:   3'- cCAGUgCU----UCUG------CAGCAGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 23361 0.69 0.875737
Target:  5'- gGGUCgACGucGACGuUCGgaucCGUCGCg -3'
miRNA:   3'- -CCAG-UGCuuCUGC-AGCaguaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 22335 0.69 0.875737
Target:  5'- aGGagACGgcGACcUCGUCGcgguccUCGUCGUa -3'
miRNA:   3'- -CCagUGCuuCUGcAGCAGU------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 18695 0.67 0.92891
Target:  5'- cGUCAuccucguCGAcGGCGUCGUCGcCGUCa- -3'
miRNA:   3'- cCAGU-------GCUuCUGCAGCAGUaGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 57116 0.67 0.929474
Target:  5'- -aUCcaguCGAGGACGUCcUCggUGUCGCc -3'
miRNA:   3'- ccAGu---GCUUCUGCAGcAGuaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 13767 0.67 0.932794
Target:  5'- aGGUCGCGcuGGGCGggcucggagaucgCGUCcgguUgGUCGCg -3'
miRNA:   3'- -CCAGUGCu-UCUGCa------------GCAGu---AgCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 48978 0.66 0.962079
Target:  5'- cGUCuuCGucGACGUCGcggccCAUCG-CGCg -3'
miRNA:   3'- cCAGu-GCuuCUGCAGCa----GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 58121 0.66 0.962079
Target:  5'- gGGUUcuCGucGGCgGUCGUCGUCGagcCGCc -3'
miRNA:   3'- -CCAGu-GCuuCUG-CAGCAGUAGCa--GCG- -5'
16276 5' -50.5 NC_004084.1 + 34722 0.66 0.962079
Target:  5'- cGUCugGGAGACGcucaccgCGUcCAUUGcCGUc -3'
miRNA:   3'- cCAGugCUUCUGCa------GCA-GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 7476 0.66 0.958224
Target:  5'- cGUCGaggaGGAGAUcaggGUCGUCGaCGUCGa -3'
miRNA:   3'- cCAGUg---CUUCUG----CAGCAGUaGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 7174 0.66 0.958224
Target:  5'- cGGUCgcaGCGAuccGGACGUCGagCugcUCGaCGCa -3'
miRNA:   3'- -CCAG---UGCU---UCUGCAGCa-Gu--AGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 19973 0.66 0.954108
Target:  5'- uGGU--UGAcGACGUCGaCGUCG-CGCg -3'
miRNA:   3'- -CCAguGCUuCUGCAGCaGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 16103 0.66 0.949727
Target:  5'- cGUCcCGAcGGuCGUCGcgAUCGUCGCc -3'
miRNA:   3'- cCAGuGCU-UCuGCAGCagUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 45398 0.67 0.945076
Target:  5'- cGGUCGUGAAGGUGUUGcUCGagGUCGUc -3'
miRNA:   3'- -CCAGUGCUUCUGCAGC-AGUagCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 48417 0.67 0.940152
Target:  5'- -aUCuCGGAGAucuuCGUCGaCGUCGUCGg -3'
miRNA:   3'- ccAGuGCUUCU----GCAGCaGUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 21241 0.67 0.940152
Target:  5'- cGGUCuucuCGAuGAUGUCGaaCGccccgagcUCGUCGCg -3'
miRNA:   3'- -CCAGu---GCUuCUGCAGCa-GU--------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 9255 0.67 0.940152
Target:  5'- cGUCuCGggGuCGUCGuUCGUgaacgcaucgaaCGUCGCc -3'
miRNA:   3'- cCAGuGCuuCuGCAGC-AGUA------------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 35443 0.67 0.940152
Target:  5'- aGGUCgACcAGGACucgGUCGgCcUCGUCGCg -3'
miRNA:   3'- -CCAG-UGcUUCUG---CAGCaGuAGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.