miRNA display CGI


Results 81 - 100 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 34722 0.66 0.962079
Target:  5'- cGUCugGGAGACGcucaccgCGUcCAUUGcCGUc -3'
miRNA:   3'- cCAGugCUUCUGCa------GCA-GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 58121 0.66 0.962079
Target:  5'- gGGUUcuCGucGGCgGUCGUCGUCGagcCGCc -3'
miRNA:   3'- -CCAGu-GCuuCUG-CAGCAGUAGCa--GCG- -5'
16276 5' -50.5 NC_004084.1 + 48978 0.66 0.962079
Target:  5'- cGUCuuCGucGACGUCGcggccCAUCG-CGCg -3'
miRNA:   3'- cCAGu-GCuuCUGCAGCa----GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 46287 0.67 0.92891
Target:  5'- cGUCgACGGAGuCGUaGUCGUCGacguugacuccguUCGCg -3'
miRNA:   3'- cCAG-UGCUUCuGCAgCAGUAGC-------------AGCG- -5'
16276 5' -50.5 NC_004084.1 + 39592 0.67 0.923717
Target:  5'- aGGUCcCGGGcGCGcUUGUCuggCGUCGCc -3'
miRNA:   3'- -CCAGuGCUUcUGC-AGCAGua-GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 16667 0.69 0.851276
Target:  5'- aGGUCcucguCGccGGCGUCGUCccgAUCGUCa- -3'
miRNA:   3'- -CCAGu----GCuuCUGCAGCAG---UAGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 27972 0.69 0.851276
Target:  5'- cGUCcccaGCG-GGACGUCGUCcUCGccaUCGCu -3'
miRNA:   3'- cCAG----UGCuUCUGCAGCAGuAGC---AGCG- -5'
16276 5' -50.5 NC_004084.1 + 31343 0.69 0.867828
Target:  5'- cGUCGCGAuGGCgGUCGgaaaguUCGUUGCu -3'
miRNA:   3'- cCAGUGCUuCUG-CAGCagu---AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 26121 0.69 0.867828
Target:  5'- cGGUCGCGAcGAuCG-CGUUGUCGgugaGCa -3'
miRNA:   3'- -CCAGUGCUuCU-GCaGCAGUAGCag--CG- -5'
16276 5' -50.5 NC_004084.1 + 22335 0.69 0.875737
Target:  5'- aGGagACGgcGACcUCGUCGcgguccUCGUCGUa -3'
miRNA:   3'- -CCagUGCuuCUGcAGCAGU------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 23361 0.69 0.875737
Target:  5'- gGGUCgACGucGACGuUCGgaucCGUCGCg -3'
miRNA:   3'- -CCAG-UGCuuCUGC-AGCaguaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 56922 0.69 0.875737
Target:  5'- cGUCGgGAcggcGGACuucguaGUCGUCGUCGgCGCu -3'
miRNA:   3'- cCAGUgCU----UCUG------CAGCAGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 15709 0.69 0.883392
Target:  5'- cGGUgACGguGAuCGcCGUCugGUCGUCGUu -3'
miRNA:   3'- -CCAgUGCuuCU-GCaGCAG--UAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 762 0.68 0.890788
Target:  5'- cGUUcgACGAAGucCGUCcacgauUCAUCGUCGCc -3'
miRNA:   3'- cCAG--UGCUUCu-GCAGc-----AGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 869 0.68 0.90478
Target:  5'- aGUCAguCGucGACGUCGcCGUCGgaaucgguaUCGCu -3'
miRNA:   3'- cCAGU--GCuuCUGCAGCaGUAGC---------AGCG- -5'
16276 5' -50.5 NC_004084.1 + 36552 0.68 0.90478
Target:  5'- cGGUaucgacgACGGAGAUGaacUCGUCGUCGCc -3'
miRNA:   3'- -CCAg------UGCUUCUGCagcAGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 46190 0.68 0.90478
Target:  5'- uGGUagGCGGcgAGAuCGUCGUCGgaugCGUCGa -3'
miRNA:   3'- -CCAg-UGCU--UCU-GCAGCAGUa---GCAGCg -5'
16276 5' -50.5 NC_004084.1 + 54576 0.68 0.911369
Target:  5'- aGGUUccggUGGAGcCGUCGUCggCGUCGa -3'
miRNA:   3'- -CCAGu---GCUUCuGCAGCAGuaGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 36111 0.68 0.917681
Target:  5'- cGUC-CGgcGGCGuaUCGUCAUCGccgaaCGCg -3'
miRNA:   3'- cCAGuGCuuCUGC--AGCAGUAGCa----GCG- -5'
16276 5' -50.5 NC_004084.1 + 39084 0.67 0.923126
Target:  5'- uGUCGCGcuugaguGAGAcagucgccCGUCGaUCGUCGUCGa -3'
miRNA:   3'- cCAGUGC-------UUCU--------GCAGC-AGUAGCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.