Results 21 - 40 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 36552 | 0.68 | 0.90478 |
Target: 5'- cGGUaucgacgACGGAGAUGaacUCGUCGUCGCc -3' miRNA: 3'- -CCAg------UGCUUCUGCagcAGUAGCAGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 46190 | 0.68 | 0.90478 |
Target: 5'- uGGUagGCGGcgAGAuCGUCGUCGgaugCGUCGa -3' miRNA: 3'- -CCAg-UGCU--UCU-GCAGCAGUa---GCAGCg -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 46287 | 0.67 | 0.92891 |
Target: 5'- cGUCgACGGAGuCGUaGUCGUCGacguugacuccguUCGCg -3' miRNA: 3'- cCAG-UGCUUCuGCAgCAGUAGC-------------AGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 35443 | 0.67 | 0.940152 |
Target: 5'- aGGUCgACcAGGACucgGUCGgCcUCGUCGCg -3' miRNA: 3'- -CCAG-UGcUUCUG---CAGCaGuAGCAGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 14162 | 0.7 | 0.833798 |
Target: 5'- cGUCGUGAAGGCcgGUCGUCc-CGUCGUa -3' miRNA: 3'- cCAGUGCUUCUG--CAGCAGuaGCAGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 23361 | 0.69 | 0.875737 |
Target: 5'- gGGUCgACGucGACGuUCGgaucCGUCGCg -3' miRNA: 3'- -CCAG-UGCuuCUGC-AGCaguaGCAGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 36111 | 0.68 | 0.917681 |
Target: 5'- cGUC-CGgcGGCGuaUCGUCAUCGccgaaCGCg -3' miRNA: 3'- cCAGuGCuuCUGC--AGCAGUAGCa----GCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 9255 | 0.67 | 0.940152 |
Target: 5'- cGUCuCGggGuCGUCGuUCGUgaacgcaucgaaCGUCGCc -3' miRNA: 3'- cCAGuGCuuCuGCAGC-AGUA------------GCAGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 56922 | 0.69 | 0.875737 |
Target: 5'- cGUCGgGAcggcGGACuucguaGUCGUCGUCGgCGCu -3' miRNA: 3'- cCAGUgCU----UCUG------CAGCAGUAGCaGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 21241 | 0.67 | 0.940152 |
Target: 5'- cGGUCuucuCGAuGAUGUCGaaCGccccgagcUCGUCGCg -3' miRNA: 3'- -CCAGu---GCUuCUGCAGCa-GU--------AGCAGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 54576 | 0.68 | 0.911369 |
Target: 5'- aGGUUccggUGGAGcCGUCGUCggCGUCGa -3' miRNA: 3'- -CCAGu---GCUUCuGCAGCAGuaGCAGCg -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 869 | 0.68 | 0.90478 |
Target: 5'- aGUCAguCGucGACGUCGcCGUCGgaaucgguaUCGCu -3' miRNA: 3'- cCAGU--GCuuCUGCAGCaGUAGC---------AGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 39084 | 0.67 | 0.923126 |
Target: 5'- uGUCGCGcuugaguGAGAcagucgccCGUCGaUCGUCGUCGa -3' miRNA: 3'- cCAGUGC-------UUCU--------GCAGC-AGUAGCAGCg -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 39592 | 0.67 | 0.923717 |
Target: 5'- aGGUCcCGGGcGCGcUUGUCuggCGUCGCc -3' miRNA: 3'- -CCAGuGCUUcUGC-AGCAGua-GCAGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 18695 | 0.67 | 0.92891 |
Target: 5'- cGUCAuccucguCGAcGGCGUCGUCGcCGUCa- -3' miRNA: 3'- cCAGU-------GCUuCUGCAGCAGUaGCAGcg -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 13767 | 0.67 | 0.932794 |
Target: 5'- aGGUCGCGcuGGGCGggcucggagaucgCGUCcgguUgGUCGCg -3' miRNA: 3'- -CCAGUGCu-UCUGCa------------GCAGu---AgCAGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 36469 | 0.7 | 0.824735 |
Target: 5'- ---gGCGGAGACGUCGUCcUgGaCGCc -3' miRNA: 3'- ccagUGCUUCUGCAGCAGuAgCaGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 14265 | 0.7 | 0.833798 |
Target: 5'- cGGgacCAgGuGGAgGUCcUCGUCGUCGCg -3' miRNA: 3'- -CCa--GUgCuUCUgCAGcAGUAGCAGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 27972 | 0.69 | 0.851276 |
Target: 5'- cGUCcccaGCG-GGACGUCGUCcUCGccaUCGCu -3' miRNA: 3'- cCAG----UGCuUCUGCAGCAGuAGC---AGCG- -5' |
|||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 22335 | 0.69 | 0.875737 |
Target: 5'- aGGagACGgcGACcUCGUCGcgguccUCGUCGUa -3' miRNA: 3'- -CCagUGCuuCUGcAGCAGU------AGCAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home