miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 25800 0.72 0.724629
Target:  5'- aGGUgGCGAGcGACGUCGagGUagacugacuccaUGUCGCa -3'
miRNA:   3'- -CCAgUGCUU-CUGCAGCagUA------------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 48386 0.7 0.815467
Target:  5'- aGGUCAcCGucGACG-CGgCAUCGUgGCc -3'
miRNA:   3'- -CCAGU-GCuuCUGCaGCaGUAGCAgCG- -5'
16276 5' -50.5 NC_004084.1 + 27972 0.69 0.851276
Target:  5'- cGUCcccaGCG-GGACGUCGUCcUCGccaUCGCu -3'
miRNA:   3'- cCAG----UGCuUCUGCAGCAGuAGC---AGCG- -5'
16276 5' -50.5 NC_004084.1 + 45732 0.72 0.745761
Target:  5'- cGGuUCACucGGucaACGUCGUCGUCGUCcCa -3'
miRNA:   3'- -CC-AGUGcuUC---UGCAGCAGUAGCAGcG- -5'
16276 5' -50.5 NC_004084.1 + 31343 0.69 0.867828
Target:  5'- cGUCGCGAuGGCgGUCGgaaaguUCGUUGCu -3'
miRNA:   3'- cCAGUGCUuCUG-CAGCagu---AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 15759 0.75 0.549566
Target:  5'- -cUCGgGAGGACGUCGUCGgacugCGcCGCc -3'
miRNA:   3'- ccAGUgCUUCUGCAGCAGUa----GCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 9532 0.7 0.842649
Target:  5'- -aUCGCcucGcCGUCGUgCAUCGUCGCg -3'
miRNA:   3'- ccAGUGcuuCuGCAGCA-GUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 26447 0.75 0.560388
Target:  5'- -aUCACGAGGACGUCGUUcccgagcugGUUGagCGCg -3'
miRNA:   3'- ccAGUGCUUCUGCAGCAG---------UAGCa-GCG- -5'
16276 5' -50.5 NC_004084.1 + 35404 0.74 0.604174
Target:  5'- -aUCACGAccGACGg-GUCAUCGUCGUc -3'
miRNA:   3'- ccAGUGCUu-CUGCagCAGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 33258 0.73 0.648341
Target:  5'- aGGaCGuCGAGGACGUCGUCAgcUCGUUc- -3'
miRNA:   3'- -CCaGU-GCUUCUGCAGCAGU--AGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 42026 0.73 0.670375
Target:  5'- cGUCGCGAgcgAGGCgGUCGaCAUCGUCa- -3'
miRNA:   3'- cCAGUGCU---UCUG-CAGCaGUAGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 45868 0.73 0.692263
Target:  5'- cGGUgaACGG-GACGUCGUCGUCGcUCa- -3'
miRNA:   3'- -CCAg-UGCUuCUGCAGCAGUAGC-AGcg -5'
16276 5' -50.5 NC_004084.1 + 14078 0.72 0.712842
Target:  5'- --cCGCGAccgacguAGACGUCGaugUCGUCGUgGCg -3'
miRNA:   3'- ccaGUGCU-------UCUGCAGC---AGUAGCAgCG- -5'
16276 5' -50.5 NC_004084.1 + 10374 0.71 0.765408
Target:  5'- cGUC-CGGAugaguucGACGUCGagcUCGUCGUCGUc -3'
miRNA:   3'- cCAGuGCUU-------CUGCAGC---AGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 30001 0.71 0.766429
Target:  5'- uGGUCGCuGguGACGaCGUCAgCGuUCGCa -3'
miRNA:   3'- -CCAGUG-CuuCUGCaGCAGUaGC-AGCG- -5'
16276 5' -50.5 NC_004084.1 + 11718 0.71 0.786541
Target:  5'- cGUCGCGGuAGACGUCGcCGgcgacgugcUCGaaUCGCg -3'
miRNA:   3'- cCAGUGCU-UCUGCAGCaGU---------AGC--AGCG- -5'
16276 5' -50.5 NC_004084.1 + 17227 0.71 0.796359
Target:  5'- cGUCGCG--GGCGUCGUguUCGUCccaGCu -3'
miRNA:   3'- cCAGUGCuuCUGCAGCAguAGCAG---CG- -5'
16276 5' -50.5 NC_004084.1 + 36469 0.7 0.824735
Target:  5'- ---gGCGGAGACGUCGUCcUgGaCGCc -3'
miRNA:   3'- ccagUGCUUCUGCAGCAGuAgCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 57820 0.7 0.824735
Target:  5'- uGGUCugGuuGACGUCGgccgUCAUC-UCGa -3'
miRNA:   3'- -CCAGugCuuCUGCAGC----AGUAGcAGCg -5'
16276 5' -50.5 NC_004084.1 + 14265 0.7 0.833798
Target:  5'- cGGgacCAgGuGGAgGUCcUCGUCGUCGCg -3'
miRNA:   3'- -CCa--GUgCuUCUgCAGcAGUAGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.