miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 35887 0.74 0.637297
Target:  5'- cGGUCGucuucggcCGGAGGCGaUCGUCGUCGaggaugaCGCg -3'
miRNA:   3'- -CCAGU--------GCUUCUGC-AGCAGUAGCa------GCG- -5'
16276 5' -50.5 NC_004084.1 + 11380 0.66 0.96568
Target:  5'- aGUC-CGGGcacuccccGGCaUCGUCAUCGaUCGCg -3'
miRNA:   3'- cCAGuGCUU--------CUGcAGCAGUAGC-AGCG- -5'
16276 5' -50.5 NC_004084.1 + 48978 0.66 0.962079
Target:  5'- cGUCuuCGucGACGUCGcggccCAUCG-CGCg -3'
miRNA:   3'- cCAGu-GCuuCUGCAGCa----GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 58121 0.66 0.962079
Target:  5'- gGGUUcuCGucGGCgGUCGUCGUCGagcCGCc -3'
miRNA:   3'- -CCAGu-GCuuCUG-CAGCAGUAGCa--GCG- -5'
16276 5' -50.5 NC_004084.1 + 34722 0.66 0.962079
Target:  5'- cGUCugGGAGACGcucaccgCGUcCAUUGcCGUc -3'
miRNA:   3'- cCAGugCUUCUGCa------GCA-GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 7476 0.66 0.958224
Target:  5'- cGUCGaggaGGAGAUcaggGUCGUCGaCGUCGa -3'
miRNA:   3'- cCAGUg---CUUCUG----CAGCAGUaGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 7174 0.66 0.958224
Target:  5'- cGGUCgcaGCGAuccGGACGUCGagCugcUCGaCGCa -3'
miRNA:   3'- -CCAG---UGCU---UCUGCAGCa-Gu--AGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 19973 0.66 0.954108
Target:  5'- uGGU--UGAcGACGUCGaCGUCG-CGCg -3'
miRNA:   3'- -CCAguGCUuCUGCAGCaGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 16103 0.66 0.949727
Target:  5'- cGUCcCGAcGGuCGUCGcgAUCGUCGCc -3'
miRNA:   3'- cCAGuGCU-UCuGCAGCagUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 45486 1.15 0.00202
Target:  5'- cGGUCACGAAGACGUCGUCAUCGUCGCc -3'
miRNA:   3'- -CCAGUGCUUCUGCAGCAGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 33258 0.73 0.648341
Target:  5'- aGGaCGuCGAGGACGUCGUCAgcUCGUUc- -3'
miRNA:   3'- -CCaGU-GCUUCUGCAGCAGU--AGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 34696 0.68 0.897919
Target:  5'- uGUCGCGcuGGGGUGUCGUCcuuuccgggCGUCGCc -3'
miRNA:   3'- cCAGUGC--UUCUGCAGCAGua-------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 28405 0.66 0.954108
Target:  5'- cGUCgauGCGAAcgcuGACGUCGUCAccagcgaccaggUCGaCGCc -3'
miRNA:   3'- cCAG---UGCUU----CUGCAGCAGU------------AGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 13330 0.66 0.954108
Target:  5'- cGGagACGAucAUGUCGuUCAUCG-CGCc -3'
miRNA:   3'- -CCagUGCUucUGCAGC-AGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 34836 0.66 0.958224
Target:  5'- ---gGCGGAGcACGaCGUCGUCGUacgagaCGCa -3'
miRNA:   3'- ccagUGCUUC-UGCaGCAGUAGCA------GCG- -5'
16276 5' -50.5 NC_004084.1 + 28653 0.71 0.796359
Target:  5'- cGUCGCGAugcaGGACG--GUCAUCGucUCGCc -3'
miRNA:   3'- cCAGUGCU----UCUGCagCAGUAGC--AGCG- -5'
16276 5' -50.5 NC_004084.1 + 54614 0.66 0.962079
Target:  5'- aGUCAuCGgcGGCGUCacGUaucgaAUCGUCGUc -3'
miRNA:   3'- cCAGU-GCuuCUGCAG--CAg----UAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 23598 0.66 0.949727
Target:  5'- -aUCGCGAuGGACG-CGgugagCA-CGUCGCa -3'
miRNA:   3'- ccAGUGCU-UCUGCaGCa----GUaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 19731 0.68 0.90478
Target:  5'- uGGUgGCGAGGAC----UCcUCGUCGCu -3'
miRNA:   3'- -CCAgUGCUUCUGcagcAGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 52655 0.68 0.897919
Target:  5'- cGGcUGCGGcgAGACGgagaUCGUCGUCGagGCg -3'
miRNA:   3'- -CCaGUGCU--UCUGC----AGCAGUAGCagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.