Results 81 - 100 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16276 | 5' | -50.5 | NC_004084.1 | + | 16127 | 0.72 | 0.736304 |
Target: 5'- cGagACGAAGACGgugauggacgaacugCG-CGUCGUCGCg -3' miRNA: 3'- cCagUGCUUCUGCa--------------GCaGUAGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 39260 | 0.72 | 0.724629 |
Target: 5'- cGG-CGgGAagauGGugGUCGUCGaucgCGUCGCg -3' miRNA: 3'- -CCaGUgCU----UCugCAGCAGUa---GCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 34696 | 0.68 | 0.897919 |
Target: 5'- uGUCGCGcuGGGGUGUCGUCcuuuccgggCGUCGCc -3' miRNA: 3'- cCAGUGC--UUCUGCAGCAGua-------GCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 19731 | 0.68 | 0.90478 |
Target: 5'- uGGUgGCGAGGAC----UCcUCGUCGCu -3' miRNA: 3'- -CCAgUGCUUCUGcagcAGuAGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 5473 | 0.68 | 0.911369 |
Target: 5'- -aUCACGAcGACGcCGaCGgccagaUCGUCGCa -3' miRNA: 3'- ccAGUGCUuCUGCaGCaGU------AGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29063 | 0.68 | 0.917681 |
Target: 5'- aGGcCGCGAccgcccgcucGGGgG-CGUCGUCGcCGCg -3' miRNA: 3'- -CCaGUGCU----------UCUgCaGCAGUAGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 38443 | 0.66 | 0.962079 |
Target: 5'- --aCGCGc-GACGUCGaCGUCGUCa- -3' miRNA: 3'- ccaGUGCuuCUGCAGCaGUAGCAGcg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 54614 | 0.66 | 0.962079 |
Target: 5'- aGUCAuCGgcGGCGUCacGUaucgaAUCGUCGUc -3' miRNA: 3'- cCAGU-GCuuCUGCAG--CAg----UAGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 34836 | 0.66 | 0.958224 |
Target: 5'- ---gGCGGAGcACGaCGUCGUCGUacgagaCGCa -3' miRNA: 3'- ccagUGCUUC-UGCaGCAGUAGCA------GCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 13330 | 0.66 | 0.954108 |
Target: 5'- cGGagACGAucAUGUCGuUCAUCG-CGCc -3' miRNA: 3'- -CCagUGCUucUGCAGC-AGUAGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 28405 | 0.66 | 0.954108 |
Target: 5'- cGUCgauGCGAAcgcuGACGUCGUCAccagcgaccaggUCGaCGCc -3' miRNA: 3'- cCAG---UGCUU----CUGCAGCAGU------------AGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 23598 | 0.66 | 0.949727 |
Target: 5'- -aUCGCGAuGGACG-CGgugagCA-CGUCGCa -3' miRNA: 3'- ccAGUGCU-UCUGCaGCa----GUaGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 1356 | 0.67 | 0.945076 |
Target: 5'- --cCACGGgcGGAcCGUCGUgAUCGggaCGCg -3' miRNA: 3'- ccaGUGCU--UCU-GCAGCAgUAGCa--GCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 4496 | 0.67 | 0.944596 |
Target: 5'- --aCACGAaacugcaGGAUGUCGagAUCGccUCGCa -3' miRNA: 3'- ccaGUGCU-------UCUGCAGCagUAGC--AGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29579 | 0.67 | 0.940152 |
Target: 5'- -aUCGcCGGguGGGCGUCGUUcgCG-CGCa -3' miRNA: 3'- ccAGU-GCU--UCUGCAGCAGuaGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 8229 | 0.67 | 0.940152 |
Target: 5'- cGGUUGCaGAGGGCGaCGUCGagacgaUCGaCGCc -3' miRNA: 3'- -CCAGUG-CUUCUGCaGCAGU------AGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 31349 | 0.67 | 0.929474 |
Target: 5'- -uUCGuCGucGACGUCGagCAUCG-CGCg -3' miRNA: 3'- ccAGU-GCuuCUGCAGCa-GUAGCaGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 26678 | 0.67 | 0.923717 |
Target: 5'- cGGUCugaGAGGAgG-CGaCAUCGUCGa -3' miRNA: 3'- -CCAGug-CUUCUgCaGCaGUAGCAGCg -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29220 | 0.67 | 0.923717 |
Target: 5'- --gCGCGucGACGUUGuUCGcgggcgaguacUCGUCGCg -3' miRNA: 3'- ccaGUGCuuCUGCAGC-AGU-----------AGCAGCG- -5' |
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16276 | 5' | -50.5 | NC_004084.1 | + | 29696 | 0.68 | 0.920129 |
Target: 5'- cGGUCGCGGacgcuguccuggcugAGucGCGUCGUCuggcCGUcCGCc -3' miRNA: 3'- -CCAGUGCU---------------UC--UGCAGCAGua--GCA-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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