miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 8229 0.67 0.940152
Target:  5'- cGGUUGCaGAGGGCGaCGUCGagacgaUCGaCGCc -3'
miRNA:   3'- -CCAGUG-CUUCUGCaGCAGU------AGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 21241 0.67 0.940152
Target:  5'- cGGUCuucuCGAuGAUGUCGaaCGccccgagcUCGUCGCg -3'
miRNA:   3'- -CCAGu---GCUuCUGCAGCa-GU--------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 9255 0.67 0.940152
Target:  5'- cGUCuCGggGuCGUCGuUCGUgaacgcaucgaaCGUCGCc -3'
miRNA:   3'- cCAGuGCuuCuGCAGC-AGUA------------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 35443 0.67 0.940152
Target:  5'- aGGUCgACcAGGACucgGUCGgCcUCGUCGCg -3'
miRNA:   3'- -CCAG-UGcUUCUG---CAGCaGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 13767 0.67 0.932794
Target:  5'- aGGUCGCGcuGGGCGggcucggagaucgCGUCcgguUgGUCGCg -3'
miRNA:   3'- -CCAGUGCu-UCUGCa------------GCAGu---AgCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 57116 0.67 0.929474
Target:  5'- -aUCcaguCGAGGACGUCcUCggUGUCGCc -3'
miRNA:   3'- ccAGu---GCUUCUGCAGcAGuaGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 31349 0.67 0.929474
Target:  5'- -uUCGuCGucGACGUCGagCAUCG-CGCg -3'
miRNA:   3'- ccAGU-GCuuCUGCAGCa-GUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 18695 0.67 0.92891
Target:  5'- cGUCAuccucguCGAcGGCGUCGUCGcCGUCa- -3'
miRNA:   3'- cCAGU-------GCUuCUGCAGCAGUaGCAGcg -5'
16276 5' -50.5 NC_004084.1 + 46287 0.67 0.92891
Target:  5'- cGUCgACGGAGuCGUaGUCGUCGacguugacuccguUCGCg -3'
miRNA:   3'- cCAG-UGCUUCuGCAgCAGUAGC-------------AGCG- -5'
16276 5' -50.5 NC_004084.1 + 26678 0.67 0.923717
Target:  5'- cGGUCugaGAGGAgG-CGaCAUCGUCGa -3'
miRNA:   3'- -CCAGug-CUUCUgCaGCaGUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 29220 0.67 0.923717
Target:  5'- --gCGCGucGACGUUGuUCGcgggcgaguacUCGUCGCg -3'
miRNA:   3'- ccaGUGCuuCUGCAGC-AGU-----------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 39592 0.67 0.923717
Target:  5'- aGGUCcCGGGcGCGcUUGUCuggCGUCGCc -3'
miRNA:   3'- -CCAGuGCUUcUGC-AGCAGua-GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 39084 0.67 0.923126
Target:  5'- uGUCGCGcuugaguGAGAcagucgccCGUCGaUCGUCGUCGa -3'
miRNA:   3'- cCAGUGC-------UUCU--------GCAGC-AGUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 29696 0.68 0.920129
Target:  5'- cGGUCGCGGacgcuguccuggcugAGucGCGUCGUCuggcCGUcCGCc -3'
miRNA:   3'- -CCAGUGCU---------------UC--UGCAGCAGua--GCA-GCG- -5'
16276 5' -50.5 NC_004084.1 + 29063 0.68 0.917681
Target:  5'- aGGcCGCGAccgcccgcucGGGgG-CGUCGUCGcCGCg -3'
miRNA:   3'- -CCaGUGCU----------UCUgCaGCAGUAGCaGCG- -5'
16276 5' -50.5 NC_004084.1 + 36111 0.68 0.917681
Target:  5'- cGUC-CGgcGGCGuaUCGUCAUCGccgaaCGCg -3'
miRNA:   3'- cCAGuGCuuCUGC--AGCAGUAGCa----GCG- -5'
16276 5' -50.5 NC_004084.1 + 54576 0.68 0.911369
Target:  5'- aGGUUccggUGGAGcCGUCGUCggCGUCGa -3'
miRNA:   3'- -CCAGu---GCUUCuGCAGCAGuaGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 5473 0.68 0.911369
Target:  5'- -aUCACGAcGACGcCGaCGgccagaUCGUCGCa -3'
miRNA:   3'- ccAGUGCUuCUGCaGCaGU------AGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 46190 0.68 0.90478
Target:  5'- uGGUagGCGGcgAGAuCGUCGUCGgaugCGUCGa -3'
miRNA:   3'- -CCAg-UGCU--UCU-GCAGCAGUa---GCAGCg -5'
16276 5' -50.5 NC_004084.1 + 19731 0.68 0.90478
Target:  5'- uGGUgGCGAGGAC----UCcUCGUCGCu -3'
miRNA:   3'- -CCAgUGCUUCUGcagcAGuAGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.