miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16277 5' -50.5 NC_004084.1 + 20905 0.66 0.948812
Target:  5'- -cGACGAGG-ACaUCAUCGA-CgUCCg -3'
miRNA:   3'- acUUGCUCCaUGaAGUAGCUcGgAGG- -5'
16277 5' -50.5 NC_004084.1 + 14272 0.66 0.948812
Target:  5'- aGGugGAGGUcCUcgUCGUCGcgagcGGCUUCg -3'
miRNA:   3'- aCUugCUCCAuGA--AGUAGC-----UCGGAGg -5'
16277 5' -50.5 NC_004084.1 + 11940 0.66 0.948812
Target:  5'- cGAccaGCGAGG-ACUcgAUCGAGCUgacguacuUCCa -3'
miRNA:   3'- aCU---UGCUCCaUGAagUAGCUCGG--------AGG- -5'
16277 5' -50.5 NC_004084.1 + 3728 0.66 0.948812
Target:  5'- aUGGACGAGcGcgGCUUCGUUcAG-CUCCu -3'
miRNA:   3'- -ACUUGCUC-Ca-UGAAGUAGcUCgGAGG- -5'
16277 5' -50.5 NC_004084.1 + 56669 0.66 0.948812
Target:  5'- --cGCucGGUACUUCGgcggCGGGUCUCg -3'
miRNA:   3'- acuUGcuCCAUGAAGUa---GCUCGGAGg -5'
16277 5' -50.5 NC_004084.1 + 3658 0.66 0.944007
Target:  5'- -uGGCGGGGguuggGCUuggCGUCGAGgaaCUCCu -3'
miRNA:   3'- acUUGCUCCa----UGAa--GUAGCUCg--GAGG- -5'
16277 5' -50.5 NC_004084.1 + 57355 0.67 0.915663
Target:  5'- cUGGAUcuGGUugUUCAUCGcccagauGCCUCg -3'
miRNA:   3'- -ACUUGcuCCAugAAGUAGCu------CGGAGg -5'
16277 5' -50.5 NC_004084.1 + 56808 0.67 0.909127
Target:  5'- ---uCGAGG-AgUUCAUCGAGCagagCUCCc -3'
miRNA:   3'- acuuGCUCCaUgAAGUAGCUCG----GAGG- -5'
16277 5' -50.5 NC_004084.1 + 35694 0.67 0.902304
Target:  5'- cUGGGCGG---ACUUCGUCGGGUCgcucgCCg -3'
miRNA:   3'- -ACUUGCUccaUGAAGUAGCUCGGa----GG- -5'
16277 5' -50.5 NC_004084.1 + 57106 0.68 0.854741
Target:  5'- cGAGCGccGUGCUgagauccuaucacUCAUCGAGCgagCCg -3'
miRNA:   3'- aCUUGCucCAUGA-------------AGUAGCUCGga-GG- -5'
16277 5' -50.5 NC_004084.1 + 44220 0.69 0.818523
Target:  5'- uUGAACuaauccgaGGGUAUUUCggcucacucgcuuGUCGAGCCUCg -3'
miRNA:   3'- -ACUUGc-------UCCAUGAAG-------------UAGCUCGGAGg -5'
16277 5' -50.5 NC_004084.1 + 22831 0.69 0.809897
Target:  5'- cGggUGAGGcg-UUCGUCGAcgGCCUCg -3'
miRNA:   3'- aCuuGCUCCaugAAGUAGCU--CGGAGg -5'
16277 5' -50.5 NC_004084.1 + 49593 0.7 0.800127
Target:  5'- -cGACGAGGUACUUgG-CGAGUUcgCCg -3'
miRNA:   3'- acUUGCUCCAUGAAgUaGCUCGGa-GG- -5'
16277 5' -50.5 NC_004084.1 + 36865 0.7 0.759321
Target:  5'- cGAuuCGAGGaccUGC-UCA-CGGGCCUCCu -3'
miRNA:   3'- aCUu-GCUCC---AUGaAGUaGCUCGGAGG- -5'
16277 5' -50.5 NC_004084.1 + 1543 0.7 0.759321
Target:  5'- cUGGAcCGAGGcgACggcCGUCGAGCCggagCCc -3'
miRNA:   3'- -ACUU-GCUCCa-UGaa-GUAGCUCGGa---GG- -5'
16277 5' -50.5 NC_004084.1 + 19640 0.73 0.608889
Target:  5'- aGAACGAGcgcccgaaggucgucGUGCgUCAUCGGacguGCCUCCc -3'
miRNA:   3'- aCUUGCUC---------------CAUGaAGUAGCU----CGGAGG- -5'
16277 5' -50.5 NC_004084.1 + 50107 0.75 0.515998
Target:  5'- cGAGCGcGGUACUUCGagUCGAGgC-CCg -3'
miRNA:   3'- aCUUGCuCCAUGAAGU--AGCUCgGaGG- -5'
16277 5' -50.5 NC_004084.1 + 45122 1.14 0.001729
Target:  5'- cUGAACGAGGUACUUCAUCGAGCCUCCg -3'
miRNA:   3'- -ACUUGCUCCAUGAAGUAGCUCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.