Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16277 | 5' | -50.5 | NC_004084.1 | + | 57355 | 0.67 | 0.915663 |
Target: 5'- cUGGAUcuGGUugUUCAUCGcccagauGCCUCg -3' miRNA: 3'- -ACUUGcuCCAugAAGUAGCu------CGGAGg -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 57106 | 0.68 | 0.854741 |
Target: 5'- cGAGCGccGUGCUgagauccuaucacUCAUCGAGCgagCCg -3' miRNA: 3'- aCUUGCucCAUGA-------------AGUAGCUCGga-GG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 56808 | 0.67 | 0.909127 |
Target: 5'- ---uCGAGG-AgUUCAUCGAGCagagCUCCc -3' miRNA: 3'- acuuGCUCCaUgAAGUAGCUCG----GAGG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 56669 | 0.66 | 0.948812 |
Target: 5'- --cGCucGGUACUUCGgcggCGGGUCUCg -3' miRNA: 3'- acuUGcuCCAUGAAGUa---GCUCGGAGg -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 50107 | 0.75 | 0.515998 |
Target: 5'- cGAGCGcGGUACUUCGagUCGAGgC-CCg -3' miRNA: 3'- aCUUGCuCCAUGAAGU--AGCUCgGaGG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 49593 | 0.7 | 0.800127 |
Target: 5'- -cGACGAGGUACUUgG-CGAGUUcgCCg -3' miRNA: 3'- acUUGCUCCAUGAAgUaGCUCGGa-GG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 45122 | 1.14 | 0.001729 |
Target: 5'- cUGAACGAGGUACUUCAUCGAGCCUCCg -3' miRNA: 3'- -ACUUGCUCCAUGAAGUAGCUCGGAGG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 44220 | 0.69 | 0.818523 |
Target: 5'- uUGAACuaauccgaGGGUAUUUCggcucacucgcuuGUCGAGCCUCg -3' miRNA: 3'- -ACUUGc-------UCCAUGAAG-------------UAGCUCGGAGg -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 36865 | 0.7 | 0.759321 |
Target: 5'- cGAuuCGAGGaccUGC-UCA-CGGGCCUCCu -3' miRNA: 3'- aCUu-GCUCC---AUGaAGUaGCUCGGAGG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 35694 | 0.67 | 0.902304 |
Target: 5'- cUGGGCGG---ACUUCGUCGGGUCgcucgCCg -3' miRNA: 3'- -ACUUGCUccaUGAAGUAGCUCGGa----GG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 22831 | 0.69 | 0.809897 |
Target: 5'- cGggUGAGGcg-UUCGUCGAcgGCCUCg -3' miRNA: 3'- aCuuGCUCCaugAAGUAGCU--CGGAGg -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 20905 | 0.66 | 0.948812 |
Target: 5'- -cGACGAGG-ACaUCAUCGA-CgUCCg -3' miRNA: 3'- acUUGCUCCaUGaAGUAGCUcGgAGG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 19640 | 0.73 | 0.608889 |
Target: 5'- aGAACGAGcgcccgaaggucgucGUGCgUCAUCGGacguGCCUCCc -3' miRNA: 3'- aCUUGCUC---------------CAUGaAGUAGCU----CGGAGG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 14272 | 0.66 | 0.948812 |
Target: 5'- aGGugGAGGUcCUcgUCGUCGcgagcGGCUUCg -3' miRNA: 3'- aCUugCUCCAuGA--AGUAGC-----UCGGAGg -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 11940 | 0.66 | 0.948812 |
Target: 5'- cGAccaGCGAGG-ACUcgAUCGAGCUgacguacuUCCa -3' miRNA: 3'- aCU---UGCUCCaUGAagUAGCUCGG--------AGG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 3728 | 0.66 | 0.948812 |
Target: 5'- aUGGACGAGcGcgGCUUCGUUcAG-CUCCu -3' miRNA: 3'- -ACUUGCUC-Ca-UGAAGUAGcUCgGAGG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 3658 | 0.66 | 0.944007 |
Target: 5'- -uGGCGGGGguuggGCUuggCGUCGAGgaaCUCCu -3' miRNA: 3'- acUUGCUCCa----UGAa--GUAGCUCg--GAGG- -5' |
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16277 | 5' | -50.5 | NC_004084.1 | + | 1543 | 0.7 | 0.759321 |
Target: 5'- cUGGAcCGAGGcgACggcCGUCGAGCCggagCCc -3' miRNA: 3'- -ACUU-GCUCCa-UGaa-GUAGCUCGGa---GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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