miRNA display CGI

Results 1 - 11 of 11 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16278	3'	-59.5	NC_004084.1	+	21821	0.66	0.531503
	Target:  5'- -cGUCCGCGGUUCaCAGaGaacuCGCCAu -3' miRNA:   3'- acCAGGCGCCAAGcGUC-Cagu-GCGGU- -5'
16278	3'	-59.5	NC_004084.1	+	57618	0.66	0.531503
	Target:  5'- gGaGUUCGCGcUUCGUcucgAGGUCGCGCg- -3' miRNA:   3'- aC-CAGGCGCcAAGCG----UCCAGUGCGgu -5'
16278	3'	-59.5	NC_004084.1	+	50466	0.66	0.496962
	Target:  5'- cGGUCgGCGGUgucguUCGCcgauguugagggucGGGauccgcgucuucuUCGCGCCGa -3' miRNA:   3'- aCCAGgCGCCA-----AGCG--------------UCC-------------AGUGCGGU- -5'
16278	3'	-59.5	NC_004084.1	+	13746	0.66	0.481057
	Target:  5'- -uGUCCGguCGGcUCGCccucgAGGUCGCGCUg -3' miRNA:   3'- acCAGGC--GCCaAGCG-----UCCAGUGCGGu -5'
16278	3'	-59.5	NC_004084.1	+	52033	0.67	0.421033
	Target:  5'- cGGUCCuCGGcgcucUCGUagagguuuuucucgAGGUCGCGCCc -3' miRNA:   3'- aCCAGGcGCCa----AGCG--------------UCCAGUGCGGu -5'
16278	3'	-59.5	NC_004084.1	+	2841	0.69	0.330229
	Target:  5'- gGcGUCCGCGGUggaUCGCAGGaCaccaucgaagACGUCAa -3' miRNA:   3'- aC-CAGGCGCCA---AGCGUCCaG----------UGCGGU- -5'
16278	3'	-59.5	NC_004084.1	+	11594	0.69	0.330229
	Target:  5'- cGGUgucgCCGCaGUugUCGCAGGUCGCGaCGu -3' miRNA:   3'- aCCA----GGCGcCA--AGCGUCCAGUGCgGU- -5'
16278	3'	-59.5	NC_004084.1	+	18981	0.69	0.330229
	Target:  5'- cGGcCgGCGGggaagUCGUAGGUCcCGCUg -3' miRNA:   3'- aCCaGgCGCCa----AGCGUCCAGuGCGGu -5'
16278	3'	-59.5	NC_004084.1	+	42100	0.71	0.26568
	Target:  5'- cGGUCagugcuGCGGUguUCGCAguGGUCGCuGCCGu -3' miRNA:   3'- aCCAGg-----CGCCA--AGCGU--CCAGUG-CGGU- -5'
16278	3'	-59.5	NC_004084.1	+	25471	0.73	0.186031
	Target:  5'- aGGUUCGCGGgcggCGUcagaAGGUgCGCGCCGu -3' miRNA:   3'- aCCAGGCGCCaa--GCG----UCCA-GUGCGGU- -5'
16278	3'	-59.5	NC_004084.1	+	44966	1.08	0.000542
	Target:  5'- cUGGUCCGCGGUUCGCAGGUCACGCCAc -3' miRNA:   3'- -ACCAGGCGCCAAGCGUCCAGUGCGGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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