miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16278 5' -57.3 NC_004084.1 + 39259 0.66 0.617529
Target:  5'- -gCGGCGgGAagaugguggucguCGAUCGcGUCGCGGa- -3'
miRNA:   3'- agGCCGCgUU-------------GCUAGCuCAGCGCCaa -5'
16278 5' -57.3 NC_004084.1 + 58037 0.66 0.597025
Target:  5'- aUCGGCgGCGACGucccCGGGcUCGCGGc- -3'
miRNA:   3'- aGGCCG-CGUUGCua--GCUC-AGCGCCaa -5'
16278 5' -57.3 NC_004084.1 + 1017 0.67 0.586272
Target:  5'- gCCGGCGaCGucgacGCGAUCGGGggCGCGc-- -3'
miRNA:   3'- aGGCCGC-GU-----UGCUAGCUCa-GCGCcaa -5'
16278 5' -57.3 NC_004084.1 + 13108 0.67 0.586272
Target:  5'- gCCgGGCGUAGuCGAccUgGAGUUGCGGg- -3'
miRNA:   3'- aGG-CCGCGUU-GCU--AgCUCAGCGCCaa -5'
16278 5' -57.3 NC_004084.1 + 45679 0.67 0.554265
Target:  5'- gUCGGCGuCGACGAgaUCGuG-CGCGGa- -3'
miRNA:   3'- aGGCCGC-GUUGCU--AGCuCaGCGCCaa -5'
16278 5' -57.3 NC_004084.1 + 37796 0.67 0.533214
Target:  5'- uUCCGG-GCuuCGAUCGA--UGCGGUg -3'
miRNA:   3'- -AGGCCgCGuuGCUAGCUcaGCGCCAa -5'
16278 5' -57.3 NC_004084.1 + 41473 0.68 0.522795
Target:  5'- cCCGGCGaguGCGggCGAGaacggaagacgaUCGCGGa- -3'
miRNA:   3'- aGGCCGCgu-UGCuaGCUC------------AGCGCCaa -5'
16278 5' -57.3 NC_004084.1 + 11393 0.68 0.50118
Target:  5'- cCCGGCaucgucaucgaucGCGACGuccUCGAGgaacUCGCGGUc -3'
miRNA:   3'- aGGCCG-------------CGUUGCu--AGCUC----AGCGCCAa -5'
16278 5' -57.3 NC_004084.1 + 31133 0.69 0.414546
Target:  5'- -gCGGCGCcGCGAUCGuca-GCGGUUc -3'
miRNA:   3'- agGCCGCGuUGCUAGCucagCGCCAA- -5'
16278 5' -57.3 NC_004084.1 + 28886 0.7 0.405394
Target:  5'- cUCCGGCGCGucaccggccgcGCGAUCGAGgcugGCuGGa- -3'
miRNA:   3'- -AGGCCGCGU-----------UGCUAGCUCag--CG-CCaa -5'
16278 5' -57.3 NC_004084.1 + 41390 0.7 0.378714
Target:  5'- aCgGGCGCAGaCGcUCG-GUCGCGGa- -3'
miRNA:   3'- aGgCCGCGUU-GCuAGCuCAGCGCCaa -5'
16278 5' -57.3 NC_004084.1 + 19126 0.72 0.284272
Target:  5'- cUCGGUGCucGACGAUCGAGUcCGCGa-- -3'
miRNA:   3'- aGGCCGCG--UUGCUAGCUCA-GCGCcaa -5'
16278 5' -57.3 NC_004084.1 + 26119 0.77 0.140326
Target:  5'- cCCGGuCGCGACGAUCGcGUUGuCGGUg -3'
miRNA:   3'- aGGCC-GCGUUGCUAGCuCAGC-GCCAa -5'
16278 5' -57.3 NC_004084.1 + 45008 1.05 0.001368
Target:  5'- cUCCGGCGCAACGAUCGAGUCGCGGUUc -3'
miRNA:   3'- -AGGCCGCGUUGCUAGCUCAGCGCCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.