miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1628 5' -51.4 NC_001347.2 + 163203 0.66 0.997463
Target:  5'- ---uUGACcaucUGCGCGUACGUGGCGUu -3'
miRNA:   3'- cucuACUGc---GUGCGUAUGCACUGCAu -5'
1628 5' -51.4 NC_001347.2 + 113171 0.66 0.996369
Target:  5'- aGAGGgaACGCGCGCcccagccgccgGCGUGGCGg- -3'
miRNA:   3'- -CUCUacUGCGUGCGua---------UGCACUGCau -5'
1628 5' -51.4 NC_001347.2 + 82684 0.66 0.995886
Target:  5'- uGAGAUGACaGCugGUcccgaacaggguGUACGgGugGUGg -3'
miRNA:   3'- -CUCUACUG-CGugCG------------UAUGCaCugCAU- -5'
1628 5' -51.4 NC_001347.2 + 168545 0.66 0.995886
Target:  5'- cAGcgGGuCGCGCGCcgucuGUAcCGUGGCGUGg -3'
miRNA:   3'- cUCuaCU-GCGUGCG-----UAU-GCACUGCAU- -5'
1628 5' -51.4 NC_001347.2 + 1314 0.66 0.995209
Target:  5'- cGGGUGACGcCGCGCAgccagAUGaacGGCGUGg -3'
miRNA:   3'- cUCUACUGC-GUGCGUa----UGCa--CUGCAU- -5'
1628 5' -51.4 NC_001347.2 + 158544 0.67 0.992619
Target:  5'- ----gGugGUACGCG-ACGUGACGg- -3'
miRNA:   3'- cucuaCugCGUGCGUaUGCACUGCau -5'
1628 5' -51.4 NC_001347.2 + 159925 0.69 0.977876
Target:  5'- cGAGGUGGCGCGCuacuaGUAUACGUuGGCc-- -3'
miRNA:   3'- -CUCUACUGCGUG-----CGUAUGCA-CUGcau -5'
1628 5' -51.4 NC_001347.2 + 31046 0.69 0.969884
Target:  5'- cAGGUgGACGCACGacucucuUACGUGAUGUu -3'
miRNA:   3'- cUCUA-CUGCGUGCgu-----AUGCACUGCAu -5'
1628 5' -51.4 NC_001347.2 + 183485 0.7 0.956283
Target:  5'- cGGGA-GACGCGCGCAgccccagcGCGUcGCGUAc -3'
miRNA:   3'- -CUCUaCUGCGUGCGUa-------UGCAcUGCAU- -5'
1628 5' -51.4 NC_001347.2 + 137470 0.71 0.943683
Target:  5'- --cGUG-CGUGCGCGcGCGUGACGUAa -3'
miRNA:   3'- cucUACuGCGUGCGUaUGCACUGCAU- -5'
1628 5' -51.4 NC_001347.2 + 185484 0.71 0.939006
Target:  5'- ---uUGugGCGCGCAggggcuccgACGUGGCGUu -3'
miRNA:   3'- cucuACugCGUGCGUa--------UGCACUGCAu -5'
1628 5' -51.4 NC_001347.2 + 85518 0.71 0.923515
Target:  5'- uGAGcgGGCGCGCGCGcuugaGCGUGGCc-- -3'
miRNA:   3'- -CUCuaCUGCGUGCGUa----UGCACUGcau -5'
1628 5' -51.4 NC_001347.2 + 151351 0.72 0.897495
Target:  5'- -uGGUGGCGCgugggcccagccugGCGCAcUACGUGACGg- -3'
miRNA:   3'- cuCUACUGCG--------------UGCGU-AUGCACUGCau -5'
1628 5' -51.4 NC_001347.2 + 172136 0.73 0.878916
Target:  5'- cGAGGUGGCGCAUcuGUGggGCGUGACGc- -3'
miRNA:   3'- -CUCUACUGCGUG--CGUa-UGCACUGCau -5'
1628 5' -51.4 NC_001347.2 + 137034 0.74 0.823419
Target:  5'- uGGGUGugGuCACGCGagUGUGACGUAg -3'
miRNA:   3'- cUCUACugC-GUGCGUauGCACUGCAU- -5'
1628 5' -51.4 NC_001347.2 + 136945 1.07 0.014844
Target:  5'- gGAGAUGACGCACGCAUACGUGACGUAg -3'
miRNA:   3'- -CUCUACUGCGUGCGUAUGCACUGCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.