miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16282 3' -62 NC_004084.1 + 22847 0.66 0.358916
Target:  5'- aGGCGaacgucguuguagaGCUGCGUCcggcggcACUCGCCgCCGAGGu -3'
miRNA:   3'- gUCGC--------------CGACGCAG-------UGGGCGG-GGCUUU- -5'
16282 3' -62 NC_004084.1 + 35914 0.66 0.337966
Target:  5'- gAGUGGCcGCGUCGaguggacuaCGUCCCGAAc -3'
miRNA:   3'- gUCGCCGaCGCAGUgg-------GCGGGGCUUu -5'
16282 3' -62 NC_004084.1 + 39599 0.67 0.292366
Target:  5'- gGGCGcGCUugucugGCGUCGCCgaccacaCGCCCUGGAu -3'
miRNA:   3'- gUCGC-CGA------CGCAGUGG-------GCGGGGCUUu -5'
16282 3' -62 NC_004084.1 + 44407 0.68 0.28606
Target:  5'- -cGCGGCUGgcuCGgcaACCCGUUCCGAAc -3'
miRNA:   3'- guCGCCGAC---GCag-UGGGCGGGGCUUu -5'
16282 3' -62 NC_004084.1 + 9845 0.69 0.240647
Target:  5'- -uGuCGGCUGCGUCcugAUUCGCCUCGAc- -3'
miRNA:   3'- guC-GCCGACGCAG---UGGGCGGGGCUuu -5'
16282 3' -62 NC_004084.1 + 38092 0.69 0.237048
Target:  5'- aCAGCGGCcuccUGUGUCaguaugucgaugaugGCCUguuGCCCCGAGc -3'
miRNA:   3'- -GUCGCCG----ACGCAG---------------UGGG---CGGGGCUUu -5'
16282 3' -62 NC_004084.1 + 30097 0.69 0.234674
Target:  5'- aCGGCGGCgagcucgagGUGcUCACuacucgCCGCCCCGAu- -3'
miRNA:   3'- -GUCGCCGa--------CGC-AGUG------GGCGGGGCUuu -5'
16282 3' -62 NC_004084.1 + 46870 0.71 0.167412
Target:  5'- aCAGCGuuUGCGUCggcugccGCCaCGCCCCGGc- -3'
miRNA:   3'- -GUCGCcgACGCAG-------UGG-GCGGGGCUuu -5'
16282 3' -62 NC_004084.1 + 1725 0.74 0.102663
Target:  5'- uGGCGGCUGC-UCgaucggugaccgagACCCGCCgCCGAAGu -3'
miRNA:   3'- gUCGCCGACGcAG--------------UGGGCGG-GGCUUU- -5'
16282 3' -62 NC_004084.1 + 5136 0.75 0.0786
Target:  5'- -cGCGGCUGgucgccaggaCGUCGCCCGgCCCGAu- -3'
miRNA:   3'- guCGCCGAC----------GCAGUGGGCgGGGCUuu -5'
16282 3' -62 NC_004084.1 + 41774 1.05 0.000392
Target:  5'- cCAGCGGCUGCGUCACCCGCCCCGAAAa -3'
miRNA:   3'- -GUCGCCGACGCAGUGGGCGGGGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.