Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16282 | 3' | -62 | NC_004084.1 | + | 41774 | 1.05 | 0.000392 |
Target: 5'- cCAGCGGCUGCGUCACCCGCCCCGAAAa -3' miRNA: 3'- -GUCGCCGACGCAGUGGGCGGGGCUUU- -5' |
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16282 | 3' | -62 | NC_004084.1 | + | 5136 | 0.75 | 0.0786 |
Target: 5'- -cGCGGCUGgucgccaggaCGUCGCCCGgCCCGAu- -3' miRNA: 3'- guCGCCGAC----------GCAGUGGGCgGGGCUuu -5' |
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16282 | 3' | -62 | NC_004084.1 | + | 1725 | 0.74 | 0.102663 |
Target: 5'- uGGCGGCUGC-UCgaucggugaccgagACCCGCCgCCGAAGu -3' miRNA: 3'- gUCGCCGACGcAG--------------UGGGCGG-GGCUUU- -5' |
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16282 | 3' | -62 | NC_004084.1 | + | 46870 | 0.71 | 0.167412 |
Target: 5'- aCAGCGuuUGCGUCggcugccGCCaCGCCCCGGc- -3' miRNA: 3'- -GUCGCcgACGCAG-------UGG-GCGGGGCUuu -5' |
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16282 | 3' | -62 | NC_004084.1 | + | 9845 | 0.69 | 0.240647 |
Target: 5'- -uGuCGGCUGCGUCcugAUUCGCCUCGAc- -3' miRNA: 3'- guC-GCCGACGCAG---UGGGCGGGGCUuu -5' |
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16282 | 3' | -62 | NC_004084.1 | + | 38092 | 0.69 | 0.237048 |
Target: 5'- aCAGCGGCcuccUGUGUCaguaugucgaugaugGCCUguuGCCCCGAGc -3' miRNA: 3'- -GUCGCCG----ACGCAG---------------UGGG---CGGGGCUUu -5' |
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16282 | 3' | -62 | NC_004084.1 | + | 30097 | 0.69 | 0.234674 |
Target: 5'- aCGGCGGCgagcucgagGUGcUCACuacucgCCGCCCCGAu- -3' miRNA: 3'- -GUCGCCGa--------CGC-AGUG------GGCGGGGCUuu -5' |
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16282 | 3' | -62 | NC_004084.1 | + | 44407 | 0.68 | 0.28606 |
Target: 5'- -cGCGGCUGgcuCGgcaACCCGUUCCGAAc -3' miRNA: 3'- guCGCCGAC---GCag-UGGGCGGGGCUUu -5' |
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16282 | 3' | -62 | NC_004084.1 | + | 39599 | 0.67 | 0.292366 |
Target: 5'- gGGCGcGCUugucugGCGUCGCCgaccacaCGCCCUGGAu -3' miRNA: 3'- gUCGC-CGA------CGCAGUGG-------GCGGGGCUUu -5' |
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16282 | 3' | -62 | NC_004084.1 | + | 35914 | 0.66 | 0.337966 |
Target: 5'- gAGUGGCcGCGUCGaguggacuaCGUCCCGAAc -3' miRNA: 3'- gUCGCCGaCGCAGUgg-------GCGGGGCUUu -5' |
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16282 | 3' | -62 | NC_004084.1 | + | 22847 | 0.66 | 0.358916 |
Target: 5'- aGGCGaacgucguuguagaGCUGCGUCcggcggcACUCGCCgCCGAGGu -3' miRNA: 3'- gUCGC--------------CGACGCAG-------UGGGCGG-GGCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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