miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16282 5' -54.6 NC_004084.1 + 22573 0.66 0.766401
Target:  5'- -cUCgGCGuucGGCCGAUCGGCGUcuGGgGGg -3'
miRNA:   3'- gaAGgUGU---CUGGCUAGUCGCG--UCgUC- -5'
16282 5' -54.6 NC_004084.1 + 33721 0.66 0.766401
Target:  5'- uUUCCAaCAGAUCGuguuucgcCAGCgaGCGGCAGc -3'
miRNA:   3'- gAAGGU-GUCUGGCua------GUCG--CGUCGUC- -5'
16282 5' -54.6 NC_004084.1 + 49529 0.66 0.766401
Target:  5'- -aUCCACGGACgaucgaggUGAUCGGCGUgucgaaAGCuGa -3'
miRNA:   3'- gaAGGUGUCUG--------GCUAGUCGCG------UCGuC- -5'
16282 5' -54.6 NC_004084.1 + 49921 0.66 0.745642
Target:  5'- -cUUCGCuGGAuCCGG-CGGCGCAGguGg -3'
miRNA:   3'- gaAGGUG-UCU-GGCUaGUCGCGUCguC- -5'
16282 5' -54.6 NC_004084.1 + 765 0.66 0.735081
Target:  5'- --aCCAcCAGGCCGAUCGGCucgucgaGGCGa -3'
miRNA:   3'- gaaGGU-GUCUGGCUAGUCGcg-----UCGUc -5'
16282 5' -54.6 NC_004084.1 + 23501 0.66 0.724415
Target:  5'- -gUCCACAGcuauggauCCGAUCAGCG-AGUc- -3'
miRNA:   3'- gaAGGUGUCu-------GGCUAGUCGCgUCGuc -5'
16282 5' -54.6 NC_004084.1 + 16563 0.67 0.658864
Target:  5'- -cUCU-CGGGCCGAUCGGUGCcGCu- -3'
miRNA:   3'- gaAGGuGUCUGGCUAGUCGCGuCGuc -5'
16282 5' -54.6 NC_004084.1 + 20195 0.68 0.602323
Target:  5'- gUUCCGCAGucGCCGcAUCgaacgacAGCGCGGCc- -3'
miRNA:   3'- gAAGGUGUC--UGGC-UAG-------UCGCGUCGuc -5'
16282 5' -54.6 NC_004084.1 + 14748 0.7 0.516444
Target:  5'- --gUCGCAGGCac-UCGGCGCGGUAGg -3'
miRNA:   3'- gaaGGUGUCUGgcuAGUCGCGUCGUC- -5'
16282 5' -54.6 NC_004084.1 + 56887 0.71 0.474811
Target:  5'- gUUCCAgGGAUCGucgaCAGCGguGUAGa -3'
miRNA:   3'- gAAGGUgUCUGGCua--GUCGCguCGUC- -5'
16282 5' -54.6 NC_004084.1 + 41311 0.71 0.464664
Target:  5'- -gUCCuggaGCGGACCGGcgAGCGCGGguGa -3'
miRNA:   3'- gaAGG----UGUCUGGCUagUCGCGUCguC- -5'
16282 5' -54.6 NC_004084.1 + 42087 0.72 0.378919
Target:  5'- --gCCGCGGucuucCCGGUCAGUGCuGCGGu -3'
miRNA:   3'- gaaGGUGUCu----GGCUAGUCGCGuCGUC- -5'
16282 5' -54.6 NC_004084.1 + 41808 1.08 0.001327
Target:  5'- uCUUCCACAGACCGAUCAGCGCAGCAGu -3'
miRNA:   3'- -GAAGGUGUCUGGCUAGUCGCGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.