miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16283 3' -55.7 NC_004084.1 + 11172 0.66 0.741008
Target:  5'- cGGCGAgCCGGUCGuaucGUUCGUuccaGCAGc- -3'
miRNA:   3'- -UCGCUaGGCCGGCu---CAAGCA----UGUCcu -5'
16283 3' -55.7 NC_004084.1 + 53980 0.66 0.730603
Target:  5'- gGGCGcGUCgaGGCCcugcuugugaacGAGUUCGUACAGc- -3'
miRNA:   3'- -UCGC-UAGg-CCGG------------CUCAAGCAUGUCcu -5'
16283 3' -55.7 NC_004084.1 + 48352 0.66 0.730603
Target:  5'- cGGCGAUcaacgcugguucCCGGUCGAGaUCGUcaAC-GGAg -3'
miRNA:   3'- -UCGCUA------------GGCCGGCUCaAGCA--UGuCCU- -5'
16283 3' -55.7 NC_004084.1 + 11854 0.66 0.730603
Target:  5'- cGCGAUgCCGauGCCGAGUcCGacCAGGGc -3'
miRNA:   3'- uCGCUA-GGC--CGGCUCAaGCauGUCCU- -5'
16283 3' -55.7 NC_004084.1 + 55160 0.66 0.698854
Target:  5'- gAGCGu--UGGCCGGGUUCGcgACAGu- -3'
miRNA:   3'- -UCGCuagGCCGGCUCAAGCa-UGUCcu -5'
16283 3' -55.7 NC_004084.1 + 31398 0.68 0.623043
Target:  5'- cGGCGAa--GGCCGGugUCGUAgAGGAg -3'
miRNA:   3'- -UCGCUaggCCGGCUcaAGCAUgUCCU- -5'
16283 3' -55.7 NC_004084.1 + 17415 0.68 0.612166
Target:  5'- cGGUGAUCCGGuuGAucUCGUuCcGGAa -3'
miRNA:   3'- -UCGCUAGGCCggCUcaAGCAuGuCCU- -5'
16283 3' -55.7 NC_004084.1 + 49862 0.69 0.536974
Target:  5'- gAGCGAgaUCCGG-CGAG-UCcUGCGGGAc -3'
miRNA:   3'- -UCGCU--AGGCCgGCUCaAGcAUGUCCU- -5'
16283 3' -55.7 NC_004084.1 + 3014 0.7 0.495418
Target:  5'- cGGCGAUCauGCCGAGUaugUCGgcgauacCGGGAu -3'
miRNA:   3'- -UCGCUAGgcCGGCUCA---AGCau-----GUCCU- -5'
16283 3' -55.7 NC_004084.1 + 16915 0.72 0.372239
Target:  5'- aGGCGAUCgUGGCCGGGUgcgguUCGgcaucgGCGGGc -3'
miRNA:   3'- -UCGCUAG-GCCGGCUCA-----AGCa-----UGUCCu -5'
16283 3' -55.7 NC_004084.1 + 41682 1.09 0.001112
Target:  5'- aAGCGAUCCGGCCGAGUUCGUACAGGAu -3'
miRNA:   3'- -UCGCUAGGCCGGCUCAAGCAUGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.