Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 43117 | 0.66 | 0.841234 |
Target: 5'- -aUCCUGGGCGGUC---AUCAcCGUCg -3' miRNA: 3'- caAGGACCUGCUAGcgcUGGUuGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 13567 | 0.66 | 0.832342 |
Target: 5'- -cUCCUGGAa-GUCGCgGGCCGAUccgaccucgGUCa -3' miRNA: 3'- caAGGACCUgcUAGCG-CUGGUUG---------CAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 6123 | 0.66 | 0.812989 |
Target: 5'- cGUUCa-GGuCGAUgcgauucCGCGACCAGCGcCg -3' miRNA: 3'- -CAAGgaCCuGCUA-------GCGCUGGUUGCaG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 26977 | 0.66 | 0.835925 |
Target: 5'- ---gCUGGuCGAcagagaccagauccaUCGCGGCC-GCGUCg -3' miRNA: 3'- caagGACCuGCU---------------AGCGCUGGuUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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