Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16283 | 5' | -53.5 | NC_004084.1 | + | 30919 | 0.71 | 0.515583 |
Target: 5'- -cUCCUGGAagacguCGAUCGCucgUCGACGUCg -3' miRNA: 3'- caAGGACCU------GCUAGCGcu-GGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 31258 | 0.69 | 0.668466 |
Target: 5'- aGUUCgugaUGGAucCGAUCaGCGuguCCGACGUCg -3' miRNA: 3'- -CAAGg---ACCU--GCUAG-CGCu--GGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 32282 | 0.67 | 0.768803 |
Target: 5'- --aCCUGGGCGugcucAccgacaacgcgaucgUCGCGACCGggaACGUCc -3' miRNA: 3'- caaGGACCUGC-----U---------------AGCGCUGGU---UGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 35220 | 0.79 | 0.201046 |
Target: 5'- -aUCgaGccGACGAUCGCGAUCGACGUCg -3' miRNA: 3'- caAGgaC--CUGCUAGCGCUGGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 35363 | 0.66 | 0.813931 |
Target: 5'- --gCCgGcGACGAUCGCGaagugcGCCAagaucACGUCg -3' miRNA: 3'- caaGGaC-CUGCUAGCGC------UGGU-----UGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 35480 | 0.66 | 0.841234 |
Target: 5'- -gUCgaGGcgGCGAUCGCcgagaucccGACCAACGgUCg -3' miRNA: 3'- caAGgaCC--UGCUAGCG---------CUGGUUGC-AG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 38523 | 0.66 | 0.804431 |
Target: 5'- -aUCgaUGGugGAUCgGCGgACCAACGa- -3' miRNA: 3'- caAGg-ACCugCUAG-CGC-UGGUUGCag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 39606 | 0.68 | 0.733455 |
Target: 5'- -cUCCUGGACG-UgGCcGgCGACGUCc -3' miRNA: 3'- caAGGACCUGCuAgCGcUgGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 40916 | 0.68 | 0.689294 |
Target: 5'- --gCCUGGACGAggaGCagcuaccgggcugGACgGACGUCg -3' miRNA: 3'- caaGGACCUGCUag-CG-------------CUGgUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 41441 | 0.66 | 0.841234 |
Target: 5'- ---gCUGGGcCGA-CGCGAUCGAgGUCu -3' miRNA: 3'- caagGACCU-GCUaGCGCUGGUUgCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 41717 | 1.11 | 0.001354 |
Target: 5'- aGUUCCUGGACGAUCGCGACCAACGUCg -3' miRNA: 3'- -CAAGGACCUGCUAGCGCUGGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 41774 | 0.69 | 0.679448 |
Target: 5'- -cUCCcGGACGAcgUCGaCGACgAggGCGUCa -3' miRNA: 3'- caAGGaCCUGCU--AGC-GCUGgU--UGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 42300 | 0.71 | 0.558426 |
Target: 5'- cGUUCaCgaucgGcGACGAUCGCGACgAcCGUCg -3' miRNA: 3'- -CAAG-Ga----C-CUGCUAGCGCUGgUuGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 43117 | 0.66 | 0.841234 |
Target: 5'- -aUCCUGGGCGGUC---AUCAcCGUCg -3' miRNA: 3'- caAGGACCUGCUAGcgcUGGUuGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 46753 | 0.66 | 0.804431 |
Target: 5'- -gUCCUcGcCGuagucGUCGcCGACCGACGUCg -3' miRNA: 3'- caAGGAcCuGC-----UAGC-GCUGGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 47011 | 0.74 | 0.405927 |
Target: 5'- aGUUCCUcgaGGACG-UCGCGAUCGAUGa- -3' miRNA: 3'- -CAAGGA---CCUGCuAGCGCUGGUUGCag -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 48027 | 0.73 | 0.434414 |
Target: 5'- --aCCUGGACGA-CGaCGAgcUCGACGUCg -3' miRNA: 3'- caaGGACCUGCUaGC-GCU--GGUUGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 49009 | 0.67 | 0.774883 |
Target: 5'- -gUCCguguCGAUCGUGACCGacacgACGUCc -3' miRNA: 3'- caAGGaccuGCUAGCGCUGGU-----UGCAG- -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 49529 | 0.69 | 0.668466 |
Target: 5'- -aUCCacGGACGAUCGagguGAUCGGCGUg -3' miRNA: 3'- caAGGa-CCUGCUAGCg---CUGGUUGCAg -5' |
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16283 | 5' | -53.5 | NC_004084.1 | + | 50813 | 0.66 | 0.804431 |
Target: 5'- -gUCCUGGACccguUCGCGggcGCCGGCa-- -3' miRNA: 3'- caAGGACCUGcu--AGCGC---UGGUUGcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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