miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16283 5' -53.5 NC_004084.1 + 49009 0.67 0.774883
Target:  5'- -gUCCguguCGAUCGUGACCGacacgACGUCc -3'
miRNA:   3'- caAGGaccuGCUAGCGCUGGU-----UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 21753 0.72 0.474129
Target:  5'- --cCCUGGACGGUUccacggggaucgGCGGCauCGACGUCg -3'
miRNA:   3'- caaGGACCUGCUAG------------CGCUG--GUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 18828 0.69 0.668466
Target:  5'- -gUCCaggaGGACGGUggCGCGGCUuuCGUCg -3'
miRNA:   3'- caAGGa---CCUGCUA--GCGCUGGuuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 29357 0.67 0.774883
Target:  5'- --cCCgagcGGGCGGUCGCGGCCuGCc-- -3'
miRNA:   3'- caaGGa---CCUGCUAGCGCUGGuUGcag -5'
16283 5' -53.5 NC_004084.1 + 384 0.7 0.602213
Target:  5'- --cCCggGGACG-UCGCcGCCGAUGUCg -3'
miRNA:   3'- caaGGa-CCUGCuAGCGcUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 9222 0.74 0.396695
Target:  5'- -gUCCUGGAugaccugcuCGAUCaggGCGuCCAGCGUCu -3'
miRNA:   3'- caAGGACCU---------GCUAG---CGCuGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 30919 0.71 0.515583
Target:  5'- -cUCCUGGAagacguCGAUCGCucgUCGACGUCg -3'
miRNA:   3'- caAGGACCU------GCUAGCGcu-GGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 20917 0.67 0.788858
Target:  5'- gGUUCCUGGAUGcucgucuguucggguAUCuuccCGACCGugucACGUCg -3'
miRNA:   3'- -CAAGGACCUGC---------------UAGc---GCUGGU----UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 6158 0.67 0.791811
Target:  5'- gGUUCCUGG-CGAUCGgGcuCCAGguggaccucgagcuCGUCu -3'
miRNA:   3'- -CAAGGACCuGCUAGCgCu-GGUU--------------GCAG- -5'
16283 5' -53.5 NC_004084.1 + 1467 0.67 0.774883
Target:  5'- cUUCgCUGaugcGGCGAUCGaCGACCuccugguaGACGUCg -3'
miRNA:   3'- cAAG-GAC----CUGCUAGC-GCUGG--------UUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 27181 0.68 0.701266
Target:  5'- -aUCuCaGGACGAUCGCGACgCugaauGCGUa -3'
miRNA:   3'- caAG-GaCCUGCUAGCGCUG-Gu----UGCAg -5'
16283 5' -53.5 NC_004084.1 + 27566 0.72 0.494659
Target:  5'- -cUCCcGGACGGUCGCcaggaGgCAGCGUCg -3'
miRNA:   3'- caAGGaCCUGCUAGCGc----UgGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 26977 0.66 0.835925
Target:  5'- ---gCUGGuCGAcagagaccagauccaUCGCGGCC-GCGUCg -3'
miRNA:   3'- caagGACCuGCU---------------AGCGCUGGuUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 22985 0.66 0.832342
Target:  5'- -gUCCUGGuCGAccUCGCGAgcgagaUCGACGa- -3'
miRNA:   3'- caAGGACCuGCU--AGCGCU------GGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 2844 0.66 0.823238
Target:  5'- -gUCCgcGGugGAUCGCagGACaccaucgaaGACGUCa -3'
miRNA:   3'- caAGGa-CCugCUAGCG--CUGg--------UUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 35363 0.66 0.813931
Target:  5'- --gCCgGcGACGAUCGCGaagugcGCCAagaucACGUCg -3'
miRNA:   3'- caaGGaC-CUGCUAGCGC------UGGU-----UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 38523 0.66 0.804431
Target:  5'- -aUCgaUGGugGAUCgGCGgACCAACGa- -3'
miRNA:   3'- caAGg-ACCugCUAG-CGC-UGGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 3587 0.7 0.602213
Target:  5'- -----cGGGCGAcCGCGACgAACGUCc -3'
miRNA:   3'- caaggaCCUGCUaGCGCUGgUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 11927 0.7 0.613246
Target:  5'- --aCCgGcGACG-UCGCGACCAGCGa- -3'
miRNA:   3'- caaGGaC-CUGCuAGCGCUGGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 49529 0.69 0.668466
Target:  5'- -aUCCacGGACGAUCGagguGAUCGGCGUg -3'
miRNA:   3'- caAGGa-CCUGCUAGCg---CUGGUUGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.