miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16283 5' -53.5 NC_004084.1 + 20917 0.67 0.788858
Target:  5'- gGUUCCUGGAUGcucgucuguucggguAUCuuccCGACCGugucACGUCg -3'
miRNA:   3'- -CAAGGACCUGC---------------UAGc---GCUGGU----UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 1467 0.67 0.774883
Target:  5'- cUUCgCUGaugcGGCGAUCGaCGACCuccugguaGACGUCg -3'
miRNA:   3'- cAAG-GAC----CUGCUAGC-GCUGG--------UUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 51519 0.67 0.774883
Target:  5'- -cUCgUcGaGACGGUCGCGAucCCGACGUa -3'
miRNA:   3'- caAGgA-C-CUGCUAGCGCU--GGUUGCAg -5'
16283 5' -53.5 NC_004084.1 + 29357 0.67 0.774883
Target:  5'- --cCCgagcGGGCGGUCGCGGCCuGCc-- -3'
miRNA:   3'- caaGGa---CCUGCUAGCGCUGGuUGcag -5'
16283 5' -53.5 NC_004084.1 + 49009 0.67 0.774883
Target:  5'- -gUCCguguCGAUCGUGACCGacacgACGUCc -3'
miRNA:   3'- caAGGaccuGCUAGCGCUGGU-----UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 55370 0.67 0.77185
Target:  5'- aGUUCCUcGAgGGUgGCGAUCAucgccguauucgccACGUCg -3'
miRNA:   3'- -CAAGGAcCUgCUAgCGCUGGU--------------UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 32282 0.67 0.768803
Target:  5'- --aCCUGGGCGugcucAccgacaacgcgaucgUCGCGACCGggaACGUCc -3'
miRNA:   3'- caaGGACCUGC-----U---------------AGCGCUGGU---UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 10246 0.68 0.743995
Target:  5'- --gCCUGG-UGAgUCGCGGUCGGCGUCc -3'
miRNA:   3'- caaGGACCuGCU-AGCGCUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 39606 0.68 0.733455
Target:  5'- -cUCCUGGACG-UgGCcGgCGACGUCc -3'
miRNA:   3'- caAGGACCUGCuAgCGcUgGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 18900 0.68 0.733455
Target:  5'- -aUCCUcgaGGACG-UCGCGAacgaUGACGUCc -3'
miRNA:   3'- caAGGA---CCUGCuAGCGCUg---GUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 27181 0.68 0.701266
Target:  5'- -aUCuCaGGACGAUCGCGACgCugaauGCGUa -3'
miRNA:   3'- caAG-GaCCUGCUAGCGCUG-Gu----UGCAg -5'
16283 5' -53.5 NC_004084.1 + 8294 0.68 0.690386
Target:  5'- -aUCC-GGACGAUCGCGGgccUCGAC-UCg -3'
miRNA:   3'- caAGGaCCUGCUAGCGCU---GGUUGcAG- -5'
16283 5' -53.5 NC_004084.1 + 13796 0.68 0.690386
Target:  5'- -gUCC-GGuuGGUCGCGACCGagGCGaUCg -3'
miRNA:   3'- caAGGaCCugCUAGCGCUGGU--UGC-AG- -5'
16283 5' -53.5 NC_004084.1 + 16621 0.68 0.690386
Target:  5'- -cUCCUcgaGGuCGAUCGUGACgcccucgucguCGACGUCg -3'
miRNA:   3'- caAGGA---CCuGCUAGCGCUG-----------GUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 40916 0.68 0.689294
Target:  5'- --gCCUGGACGAggaGCagcuaccgggcugGACgGACGUCg -3'
miRNA:   3'- caaGGACCUGCUag-CG-------------CUGgUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 29419 0.69 0.679448
Target:  5'- -cUCCUGcaucGCGGUCaucaGGCCGACGUCg -3'
miRNA:   3'- caAGGACc---UGCUAGcg--CUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 41774 0.69 0.679448
Target:  5'- -cUCCcGGACGAcgUCGaCGACgAggGCGUCa -3'
miRNA:   3'- caAGGaCCUGCU--AGC-GCUGgU--UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 18828 0.69 0.668466
Target:  5'- -gUCCaggaGGACGGUggCGCGGCUuuCGUCg -3'
miRNA:   3'- caAGGa---CCUGCUA--GCGCUGGuuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 49529 0.69 0.668466
Target:  5'- -aUCCacGGACGAUCGagguGAUCGGCGUg -3'
miRNA:   3'- caAGGa-CCUGCUAGCg---CUGGUUGCAg -5'
16283 5' -53.5 NC_004084.1 + 31258 0.69 0.668466
Target:  5'- aGUUCgugaUGGAucCGAUCaGCGuguCCGACGUCg -3'
miRNA:   3'- -CAAGg---ACCU--GCUAG-CGCu--GGUUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.