miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16284 3' -52.9 NC_004084.1 + 41351 1.12 0.001395
Target:  5'- cGGUCUCGAACACCGCUUGCGACGUCAg -3'
miRNA:   3'- -CCAGAGCUUGUGGCGAACGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 41503 0.73 0.479822
Target:  5'- -aUCgCGGAUGCCGCUgGCGACGUUg -3'
miRNA:   3'- ccAGaGCUUGUGGCGAaCGCUGCAGu -5'
16284 3' -52.9 NC_004084.1 + 30037 0.72 0.510867
Target:  5'- aGGUCUCGcgGGgGCCGCUcGCGuCGUUg -3'
miRNA:   3'- -CCAGAGC--UUgUGGCGAaCGCuGCAGu -5'
16284 3' -52.9 NC_004084.1 + 1007 0.72 0.542715
Target:  5'- --cCUCGAGC-UCGCcgGCGACGUCGa -3'
miRNA:   3'- ccaGAGCUUGuGGCGaaCGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 25463 0.72 0.542715
Target:  5'- uGGcUUCGAGguUCGCggGCGGCGUCAg -3'
miRNA:   3'- -CCaGAGCUUguGGCGaaCGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 39592 0.72 0.553481
Target:  5'- aGGUCcCGGGCG-CGCUUGUcuGGCGUCGc -3'
miRNA:   3'- -CCAGaGCUUGUgGCGAACG--CUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 12964 0.71 0.575192
Target:  5'- cGGcUUCGAu--CCGCggGCGGCGUCAg -3'
miRNA:   3'- -CCaGAGCUuguGGCGaaCGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 46690 0.7 0.663205
Target:  5'- --aUUCGAGCACguCGCcgGCGACGUCu -3'
miRNA:   3'- ccaGAGCUUGUG--GCGaaCGCUGCAGu -5'
16284 3' -52.9 NC_004084.1 + 12432 0.69 0.728245
Target:  5'- cGUCUCGAACGCCGUga-CGAcCG-CAg -3'
miRNA:   3'- cCAGAGCUUGUGGCGaacGCU-GCaGU- -5'
16284 3' -52.9 NC_004084.1 + 52238 0.69 0.728245
Target:  5'- --aUUCGAACucauCCGcCUUGCuGACGUCGc -3'
miRNA:   3'- ccaGAGCUUGu---GGC-GAACG-CUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 30516 0.68 0.749275
Target:  5'- cGGUCcgCGAGCugCGCgagcGCGAaugacgcuguuCGUCGa -3'
miRNA:   3'- -CCAGa-GCUUGugGCGaa--CGCU-----------GCAGU- -5'
16284 3' -52.9 NC_004084.1 + 54230 0.68 0.756527
Target:  5'- cGGaUCUCGAcgucggagcgaucaGCGCCGUcgGCGAgGUUg -3'
miRNA:   3'- -CC-AGAGCU--------------UGUGGCGaaCGCUgCAGu -5'
16284 3' -52.9 NC_004084.1 + 35813 0.68 0.759616
Target:  5'- cGGUCaUGAGCucaccACCGUcucgucgGCGACGUCGu -3'
miRNA:   3'- -CCAGaGCUUG-----UGGCGaa-----CGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 43347 0.68 0.769827
Target:  5'- cGGUCUCGAACGCCGagu-CGAacaUCAc -3'
miRNA:   3'- -CCAGAGCUUGUGGCgaacGCUgc-AGU- -5'
16284 3' -52.9 NC_004084.1 + 38646 0.68 0.777893
Target:  5'- uGGUCagcagUGAGCACCGuCUgucagaccugcgGCGAgGUCAg -3'
miRNA:   3'- -CCAGa----GCUUGUGGC-GAa-----------CGCUgCAGU- -5'
16284 3' -52.9 NC_004084.1 + 45651 0.68 0.786851
Target:  5'- cGUCUCGGAUGCCGacaacgacgagacgGuCGGCGUCGa -3'
miRNA:   3'- cCAGAGCUUGUGGCgaa-----------C-GCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 9413 0.67 0.799557
Target:  5'- cGGUCacgaUCGAcacGgACCGCgcgaugggccGCGACGUCGa -3'
miRNA:   3'- -CCAG----AGCU---UgUGGCGaa--------CGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 5686 0.67 0.799557
Target:  5'- aGGUCgUCGAGguCCGCUggGUugaguucgagGACGUCGc -3'
miRNA:   3'- -CCAG-AGCUUguGGCGAa-CG----------CUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 8560 0.67 0.818515
Target:  5'- aGGaCUCGccgGAUcUCGCUcGCGACGUCGa -3'
miRNA:   3'- -CCaGAGC---UUGuGGCGAaCGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 38433 0.67 0.827705
Target:  5'- --aCUCGAGCgaaCGC--GCGACGUCGa -3'
miRNA:   3'- ccaGAGCUUGug-GCGaaCGCUGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.