Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16284 | 5' | -59.9 | NC_004084.1 | + | 51200 | 0.66 | 0.517702 |
Target: 5'- gGUCGGCGcuGGCGCGGGCuaCUgGG-CGUg -3' miRNA: 3'- -UAGCUGC--CCGCGUCUGc-GAgCCaGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 16447 | 0.66 | 0.507615 |
Target: 5'- cAUCGguuACGGGCaUGGGCGCgagCGcaGUCGCg -3' miRNA: 3'- -UAGC---UGCCCGcGUCUGCGa--GC--CAGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 21479 | 0.66 | 0.497612 |
Target: 5'- cUCGA-GGGCgGCGauCGcCUCGGUUGCg -3' miRNA: 3'- uAGCUgCCCG-CGUcuGC-GAGCCAGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 29137 | 0.66 | 0.468159 |
Target: 5'- cUCGGCGGuGUcgGCGG-UGCUggugUGGUCGCg -3' miRNA: 3'- uAGCUGCC-CG--CGUCuGCGA----GCCAGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 14731 | 0.67 | 0.45854 |
Target: 5'- cGUCGACGcGCccguccgucGCAGGCaCUCGG-CGCg -3' miRNA: 3'- -UAGCUGCcCG---------CGUCUGcGAGCCaGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 13775 | 0.67 | 0.449028 |
Target: 5'- cUgGGCGGGCuCGGAgaucgcgucCGgUUGGUCGCg -3' miRNA: 3'- uAgCUGCCCGcGUCU---------GCgAGCCAGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 3180 | 0.67 | 0.449028 |
Target: 5'- cGUCGAC-GGCGaGGACGUgaacgaggCGGUgGCg -3' miRNA: 3'- -UAGCUGcCCGCgUCUGCGa-------GCCAgCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 17268 | 0.67 | 0.436828 |
Target: 5'- aGUCGGCGaugcccucgguggaGGCGguGGCGg-CGGUgGCg -3' miRNA: 3'- -UAGCUGC--------------CCGCguCUGCgaGCCAgCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 31409 | 0.67 | 0.421166 |
Target: 5'- uAUCGGCGaaguCGCAGACGacgCGGcCGCg -3' miRNA: 3'- -UAGCUGCcc--GCGUCUGCga-GCCaGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 37934 | 0.68 | 0.385689 |
Target: 5'- cGUCGGCGGGaucguCGCguuugaAGACGaCUucgcCGGUCGCc -3' miRNA: 3'- -UAGCUGCCC-----GCG------UCUGC-GA----GCCAGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 48502 | 0.68 | 0.383109 |
Target: 5'- cUCGuCGaGGCGCucuugucuuGGACGUacgccuucacgucaUCGGUCGCc -3' miRNA: 3'- uAGCuGC-CCGCG---------UCUGCG--------------AGCCAGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 43578 | 0.68 | 0.377134 |
Target: 5'- -cCGACGaGGCGCGGAUcCUCcagugGGaUCGCg -3' miRNA: 3'- uaGCUGC-CCGCGUCUGcGAG-----CC-AGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 29410 | 0.68 | 0.360409 |
Target: 5'- cUCGAUGGGCuccugcaucGCGgucaucaggccGACG-UCGGUCGCg -3' miRNA: 3'- uAGCUGCCCG---------CGU-----------CUGCgAGCCAGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 19983 | 0.69 | 0.352244 |
Target: 5'- cGUCGACGucGCGCGuuCGCUCGaGuUCGCg -3' miRNA: 3'- -UAGCUGCc-CGCGUcuGCGAGC-C-AGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 34938 | 0.69 | 0.328541 |
Target: 5'- cUCGucACGGGCGUucguGCGCUagcggcUGGUCGCg -3' miRNA: 3'- uAGC--UGCCCGCGuc--UGCGA------GCCAGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 16942 | 0.69 | 0.313405 |
Target: 5'- cAUCGGCGGGCGUcgcGACG-UCGGgucuucgagCGCc -3' miRNA: 3'- -UAGCUGCCCGCGu--CUGCgAGCCa--------GCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 37115 | 0.7 | 0.291702 |
Target: 5'- gAUCG-CGGaGCGUGGugGCUucucgacgCGGUCGUu -3' miRNA: 3'- -UAGCuGCC-CGCGUCugCGA--------GCCAGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 6605 | 0.7 | 0.284734 |
Target: 5'- aGUCGGCGGGCGCGGAgGUaggacuUCaGGaacCGCc -3' miRNA: 3'- -UAGCUGCCCGCGUCUgCG------AG-CCa--GCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 34803 | 0.7 | 0.277897 |
Target: 5'- cUCGACGGGC-CuGACGCUuCGaG-CGCa -3' miRNA: 3'- uAGCUGCCCGcGuCUGCGA-GC-CaGCG- -5' |
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16284 | 5' | -59.9 | NC_004084.1 | + | 29690 | 0.72 | 0.227864 |
Target: 5'- -gCGACGcGGuCGCGGACGCUguccuggcUGaGUCGCg -3' miRNA: 3'- uaGCUGC-CC-GCGUCUGCGA--------GC-CAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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