Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16285 | 5' | -50.6 | NC_004084.1 | + | 47649 | 0.66 | 0.932693 |
Target: 5'- uUCGGCGUCGAgg-UCGGCGACGc--- -3' miRNA: 3'- -AGUUGUAGCUauaGGCUGCUGCccua -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 36446 | 0.67 | 0.886624 |
Target: 5'- aCGACAUCcugGGUAUCCGcguCGucCGGGAg -3' miRNA: 3'- aGUUGUAG---CUAUAGGCu--GCu-GCCCUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 44216 | 0.67 | 0.886624 |
Target: 5'- cUCGACGagCgGAUggCCGACGGCuGGGAg -3' miRNA: 3'- -AGUUGUa-G-CUAuaGGCUGCUG-CCCUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 21334 | 0.67 | 0.894058 |
Target: 5'- cUCGAgGUCGGUA-CUGACGAgGaGGAc -3' miRNA: 3'- -AGUUgUAGCUAUaGGCUGCUgC-CCUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 48044 | 0.67 | 0.903996 |
Target: 5'- cUCGACGUCGAacucAUCCGgACGgcgcugcacaccgucGCGGGGc -3' miRNA: 3'- -AGUUGUAGCUa---UAGGC-UGC---------------UGCCCUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 21376 | 0.67 | 0.908086 |
Target: 5'- aUCGACAUCGAcgaCCGugaGGCGGcGAUg -3' miRNA: 3'- -AGUUGUAGCUauaGGCug-CUGCC-CUA- -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 2391 | 0.67 | 0.914672 |
Target: 5'- aCGACAgCGA-AUCCGACGACGa--- -3' miRNA: 3'- aGUUGUaGCUaUAGGCUGCUGCccua -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 28273 | 0.67 | 0.914672 |
Target: 5'- gCGGCuUCGAc--UCGugGACGGGAg -3' miRNA: 3'- aGUUGuAGCUauaGGCugCUGCCCUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 29200 | 0.66 | 0.920969 |
Target: 5'- cUCGGCGUCGAUGUuccagagcgcgUCGACGuuguucGCGGGc- -3' miRNA: 3'- -AGUUGUAGCUAUA-----------GGCUGC------UGCCCua -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 2314 | 0.68 | 0.862709 |
Target: 5'- aCGACGUCGAcgaggaCGAUGACGaGGAg -3' miRNA: 3'- aGUUGUAGCUauag--GCUGCUGC-CCUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 4196 | 0.68 | 0.862709 |
Target: 5'- cCGACGUCGAgAUCCGACucgagccgcuGACGGu-- -3' miRNA: 3'- aGUUGUAGCUaUAGGCUG----------CUGCCcua -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 45629 | 0.68 | 0.854222 |
Target: 5'- aCAACcuGUCGGUcgUCGACGGCGucucGGAUg -3' miRNA: 3'- aGUUG--UAGCUAuaGGCUGCUGC----CCUA- -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 45162 | 0.74 | 0.535708 |
Target: 5'- uUCAcCAUCGAUc-CCGACGACGGuGAg -3' miRNA: 3'- -AGUuGUAGCUAuaGGCUGCUGCC-CUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 49851 | 0.73 | 0.613648 |
Target: 5'- gUCGACGUCGcgagcgagAUCCGGCGaguccuGCGGGAc -3' miRNA: 3'- -AGUUGUAGCua------UAGGCUGC------UGCCCUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 20057 | 0.72 | 0.669994 |
Target: 5'- gUCGAUgcuGUCGAUA-CCGACGACGccGGAg -3' miRNA: 3'- -AGUUG---UAGCUAUaGGCUGCUGC--CCUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 39244 | 0.7 | 0.788508 |
Target: 5'- aCGACAUCGGcaag-GGCGGCGGGAa -3' miRNA: 3'- aGUUGUAGCUauaggCUGCUGCCCUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 49260 | 0.7 | 0.788508 |
Target: 5'- aUCGACGUCcacGUCaCGGCGACGGcGAa -3' miRNA: 3'- -AGUUGUAGcuaUAG-GCUGCUGCC-CUa -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 40152 | 0.69 | 0.817921 |
Target: 5'- cUCAACGUCGAccgGUUCGAagaCGucauCGGGAUg -3' miRNA: 3'- -AGUUGUAGCUa--UAGGCU---GCu---GCCCUA- -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 3830 | 0.69 | 0.836523 |
Target: 5'- gUCuuCGUCGAcg-CCGACGACGGc-- -3' miRNA: 3'- -AGuuGUAGCUauaGGCUGCUGCCcua -5' |
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16285 | 5' | -50.6 | NC_004084.1 | + | 30413 | 0.68 | 0.854222 |
Target: 5'- cCGACGUCGAcGggCGGCGACGGa-- -3' miRNA: 3'- aGUUGUAGCUaUagGCUGCUGCCcua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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