Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 40695 | 1.13 | 0.000709 |
Target: 5'- gAGGACGAGCUGAUCGACUGAUGCCGCg -3' miRNA: 3'- -UCCUGCUCGACUAGCUGACUACGGCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 22440 | 0.8 | 0.138745 |
Target: 5'- cGGaGACGAGCUGAUCGAgucgggaCUGGUcacgGCCGCc -3' miRNA: 3'- -UC-CUGCUCGACUAGCU-------GACUA----CGGCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 17678 | 0.76 | 0.242881 |
Target: 5'- cAGGGCGAcGCUGGUCGAgcuucgagacgcuaCUGA-GCCGUu -3' miRNA: 3'- -UCCUGCU-CGACUAGCU--------------GACUaCGGCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 55980 | 0.74 | 0.310562 |
Target: 5'- cGGAgGGGCUGAUCGccgauggcgagcaucGCUGGcgaGCCGCc -3' miRNA: 3'- uCCUgCUCGACUAGC---------------UGACUa--CGGCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 47019 | 0.73 | 0.390767 |
Target: 5'- gAGGACGucGC-GAUCGAUgacGAUGCCGg -3' miRNA: 3'- -UCCUGCu-CGaCUAGCUGa--CUACGGCg -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 38489 | 0.72 | 0.399864 |
Target: 5'- uGGACGAGCUGGUCGA--GAUcgGCCu- -3' miRNA: 3'- uCCUGCUCGACUAGCUgaCUA--CGGcg -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 8379 | 0.72 | 0.408166 |
Target: 5'- aGGGACGAGCaucuUCGACUuucgucgGAUGuuGCu -3' miRNA: 3'- -UCCUGCUCGacu-AGCUGA-------CUACggCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 7399 | 0.72 | 0.437568 |
Target: 5'- -cGACGAGCUGAgcaaggcgaUCGACgacgagggcGAUGCCGa -3' miRNA: 3'- ucCUGCUCGACU---------AGCUGa--------CUACGGCg -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 42730 | 0.71 | 0.447309 |
Target: 5'- -cGGCGAGUUGAUCGGCUGcgagcGCCa- -3' miRNA: 3'- ucCUGCUCGACUAGCUGACua---CGGcg -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 41484 | 0.71 | 0.477232 |
Target: 5'- cGGGCGAGaacggaagacGAUCG-CgGAUGCCGCu -3' miRNA: 3'- uCCUGCUCga--------CUAGCuGaCUACGGCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 2023 | 0.71 | 0.487425 |
Target: 5'- cGGGAgcCGAGCgucuccgagaGGUCGAUgucGAUGCCGUa -3' miRNA: 3'- -UCCU--GCUCGa---------CUAGCUGa--CUACGGCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 51429 | 0.71 | 0.49772 |
Target: 5'- gAGGGCGAcacGCUGAUCuACguuggcGAggGCCGCg -3' miRNA: 3'- -UCCUGCU---CGACUAGcUGa-----CUa-CGGCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 5021 | 0.7 | 0.550521 |
Target: 5'- gGGGAucaaCGGGCUGAUCGAg-GAUGgCGa -3' miRNA: 3'- -UCCU----GCUCGACUAGCUgaCUACgGCg -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 42244 | 0.69 | 0.615896 |
Target: 5'- cGGACGgaacGGUggUGGUCGAgUGAUGCUcgaGCa -3' miRNA: 3'- uCCUGC----UCG--ACUAGCUgACUACGG---CG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 57654 | 0.68 | 0.626893 |
Target: 5'- -cGACGAGCcGAUCGGcCUGGUGguCCaGCg -3' miRNA: 3'- ucCUGCUCGaCUAGCU-GACUAC--GG-CG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 2274 | 0.68 | 0.648892 |
Target: 5'- gAGGAgaugGGGCUGGUCGACgccGAcgacacUGCgGCg -3' miRNA: 3'- -UCCUg---CUCGACUAGCUGa--CU------ACGgCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 5877 | 0.68 | 0.666451 |
Target: 5'- gAGGAgGAGCagaccgccacgggGAUCGucCUGAcGCCGUa -3' miRNA: 3'- -UCCUgCUCGa------------CUAGCu-GACUaCGGCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 30717 | 0.67 | 0.681748 |
Target: 5'- -cGAgGAGCUGAUCGAUgg--GCUGUu -3' miRNA: 3'- ucCUgCUCGACUAGCUGacuaCGGCG- -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 9707 | 0.67 | 0.69262 |
Target: 5'- cGG-UGAGUUGGcCGACgccGAUGCCGg -3' miRNA: 3'- uCCuGCUCGACUaGCUGa--CUACGGCg -5' |
|||||||
16286 | 3' | -54.6 | NC_004084.1 | + | 39329 | 0.67 | 0.69262 |
Target: 5'- --cGCGGuGCUGAUCGACgucgacguaGAcgGCCGCg -3' miRNA: 3'- uccUGCU-CGACUAGCUGa--------CUa-CGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home