miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16286 3' -54.6 NC_004084.1 + 57654 0.68 0.626893
Target:  5'- -cGACGAGCcGAUCGGcCUGGUGguCCaGCg -3'
miRNA:   3'- ucCUGCUCGaCUAGCU-GACUAC--GG-CG- -5'
16286 3' -54.6 NC_004084.1 + 57172 0.66 0.744838
Target:  5'- cAGGAUGAGgaGAUgGGCgcGAUcgcccucgaucccGCCGCc -3'
miRNA:   3'- -UCCUGCUCgaCUAgCUGa-CUA-------------CGGCG- -5'
16286 3' -54.6 NC_004084.1 + 55980 0.74 0.310562
Target:  5'- cGGAgGGGCUGAUCGccgauggcgagcaucGCUGGcgaGCCGCc -3'
miRNA:   3'- uCCUgCUCGACUAGC---------------UGACUa--CGGCG- -5'
16286 3' -54.6 NC_004084.1 + 51429 0.71 0.49772
Target:  5'- gAGGGCGAcacGCUGAUCuACguuggcGAggGCCGCg -3'
miRNA:   3'- -UCCUGCU---CGACUAGcUGa-----CUa-CGGCG- -5'
16286 3' -54.6 NC_004084.1 + 47019 0.73 0.390767
Target:  5'- gAGGACGucGC-GAUCGAUgacGAUGCCGg -3'
miRNA:   3'- -UCCUGCu-CGaCUAGCUGa--CUACGGCg -5'
16286 3' -54.6 NC_004084.1 + 42730 0.71 0.447309
Target:  5'- -cGGCGAGUUGAUCGGCUGcgagcGCCa- -3'
miRNA:   3'- ucCUGCUCGACUAGCUGACua---CGGcg -5'
16286 3' -54.6 NC_004084.1 + 42244 0.69 0.615896
Target:  5'- cGGACGgaacGGUggUGGUCGAgUGAUGCUcgaGCa -3'
miRNA:   3'- uCCUGC----UCG--ACUAGCUgACUACGG---CG- -5'
16286 3' -54.6 NC_004084.1 + 41484 0.71 0.477232
Target:  5'- cGGGCGAGaacggaagacGAUCG-CgGAUGCCGCu -3'
miRNA:   3'- uCCUGCUCga--------CUAGCuGaCUACGGCG- -5'
16286 3' -54.6 NC_004084.1 + 41111 0.66 0.786483
Target:  5'- cGGGA-GAGgaGGUUGAUgcgUGAUGgCGCu -3'
miRNA:   3'- -UCCUgCUCgaCUAGCUG---ACUACgGCG- -5'
16286 3' -54.6 NC_004084.1 + 40695 1.13 0.000709
Target:  5'- gAGGACGAGCUGAUCGACUGAUGCCGCg -3'
miRNA:   3'- -UCCUGCUCGACUAGCUGACUACGGCG- -5'
16286 3' -54.6 NC_004084.1 + 39329 0.67 0.69262
Target:  5'- --cGCGGuGCUGAUCGACgucgacguaGAcgGCCGCg -3'
miRNA:   3'- uccUGCU-CGACUAGCUGa--------CUa-CGGCG- -5'
16286 3' -54.6 NC_004084.1 + 38489 0.72 0.399864
Target:  5'- uGGACGAGCUGGUCGA--GAUcgGCCu- -3'
miRNA:   3'- uCCUGCUCGACUAGCUgaCUA--CGGcg -5'
16286 3' -54.6 NC_004084.1 + 37983 0.66 0.756232
Target:  5'- -aGACG-GUUGA-CGACUGAaGCCaGCg -3'
miRNA:   3'- ucCUGCuCGACUaGCUGACUaCGG-CG- -5'
16286 3' -54.6 NC_004084.1 + 30717 0.67 0.681748
Target:  5'- -cGAgGAGCUGAUCGAUgg--GCUGUu -3'
miRNA:   3'- ucCUgCUCGACUAGCUGacuaCGGCG- -5'
16286 3' -54.6 NC_004084.1 + 28823 0.66 0.786483
Target:  5'- uGGGCGAGCaucgCGACcGGUucGCCGUc -3'
miRNA:   3'- uCCUGCUCGacuaGCUGaCUA--CGGCG- -5'
16286 3' -54.6 NC_004084.1 + 27634 0.67 0.703434
Target:  5'- -cGACGcAGaagUGAUCGAgggGAUGCCGCc -3'
miRNA:   3'- ucCUGC-UCg--ACUAGCUga-CUACGGCG- -5'
16286 3' -54.6 NC_004084.1 + 22440 0.8 0.138745
Target:  5'- cGGaGACGAGCUGAUCGAgucgggaCUGGUcacgGCCGCc -3'
miRNA:   3'- -UC-CUGCUCGACUAGCU-------GACUA----CGGCG- -5'
16286 3' -54.6 NC_004084.1 + 18039 0.66 0.776545
Target:  5'- uGGucCGAGaccaUG-UCGGCggcuuUGAUGCCGCg -3'
miRNA:   3'- uCCu-GCUCg---ACuAGCUG-----ACUACGGCG- -5'
16286 3' -54.6 NC_004084.1 + 17678 0.76 0.242881
Target:  5'- cAGGGCGAcGCUGGUCGAgcuucgagacgcuaCUGA-GCCGUu -3'
miRNA:   3'- -UCCUGCU-CGACUAGCU--------------GACUaCGGCG- -5'
16286 3' -54.6 NC_004084.1 + 15292 0.66 0.776545
Target:  5'- -cGGCG-GCUGG-CGACggUGAUGaCCGCc -3'
miRNA:   3'- ucCUGCuCGACUaGCUG--ACUAC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.