miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16286 5' -55.8 NC_004084.1 + 630 0.67 0.597092
Target:  5'- cUGGCGaUCUCGucgugGAGCUCcucgaCGGCGUCg -3'
miRNA:   3'- -AUCGC-AGAGC-----UUCGAGcug--GUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 3929 0.67 0.60809
Target:  5'- aGGCGUcCUCGAaccGGCUUuugaaGugCAGgGUCg -3'
miRNA:   3'- aUCGCA-GAGCU---UCGAG-----CugGUCgCAG- -5'
16286 5' -55.8 NC_004084.1 + 4106 0.69 0.469679
Target:  5'- cAGCGUCUCGAuG-UCGAUCAcGaCGUCg -3'
miRNA:   3'- aUCGCAGAGCUuCgAGCUGGU-C-GCAG- -5'
16286 5' -55.8 NC_004084.1 + 6553 0.66 0.685119
Target:  5'- cGGCGUC-CGGuAGUUCGACU--CGUCg -3'
miRNA:   3'- aUCGCAGaGCU-UCGAGCUGGucGCAG- -5'
16286 5' -55.8 NC_004084.1 + 6998 0.7 0.420704
Target:  5'- cAGCGUgucgccCUCGAAGgcCUCGA-CGGCGUCg -3'
miRNA:   3'- aUCGCA------GAGCUUC--GAGCUgGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 10706 0.66 0.685119
Target:  5'- cGGUG-CUCGGuucuucGCUCGGCuCGGgGUCg -3'
miRNA:   3'- aUCGCaGAGCUu-----CGAGCUG-GUCgCAG- -5'
16286 5' -55.8 NC_004084.1 + 12665 0.66 0.648893
Target:  5'- cGGCGUCccgaUCGAgcggacugguucguAGC-CGACCAgcaccGCGUCg -3'
miRNA:   3'- aUCGCAG----AGCU--------------UCGaGCUGGU-----CGCAG- -5'
16286 5' -55.8 NC_004084.1 + 12901 0.72 0.340839
Target:  5'- cGGCGUcCUCGGAGUggcCGACCGGCc-- -3'
miRNA:   3'- aUCGCA-GAGCUUCGa--GCUGGUCGcag -5'
16286 5' -55.8 NC_004084.1 + 15404 0.66 0.663205
Target:  5'- -uGCGUCUCGuuGgggaacucCUCGAUC-GCGUCg -3'
miRNA:   3'- auCGCAGAGCuuC--------GAGCUGGuCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 17213 0.68 0.553482
Target:  5'- cGGCGUUUCGccAGCgUCG-CgGGCGUCg -3'
miRNA:   3'- aUCGCAGAGCu-UCG-AGCuGgUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 19645 0.66 0.652199
Target:  5'- gAGCGcC-CGAAGgUCGuCguGCGUCa -3'
miRNA:   3'- aUCGCaGaGCUUCgAGCuGguCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 20025 0.66 0.696005
Target:  5'- cGGCG-CUCGAGGacgaCGAUC-GCGUCu -3'
miRNA:   3'- aUCGCaGAGCUUCga--GCUGGuCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 21013 0.69 0.510867
Target:  5'- aAGCGUC-Cauca-UCGGCCAGCGUCu -3'
miRNA:   3'- aUCGCAGaGcuucgAGCUGGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 21082 0.66 0.685119
Target:  5'- gGGCGUCgUCGGGaucGC-CGAagcguUCAGCGUCg -3'
miRNA:   3'- aUCGCAG-AGCUU---CGaGCU-----GGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 21901 0.72 0.325444
Target:  5'- cGGCGUCUCGGucggccuccucaucgAGUUCGACgucgaggaaauuguCGGCGUCc -3'
miRNA:   3'- aUCGCAGAGCU---------------UCGAGCUG--------------GUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 23613 0.69 0.469679
Target:  5'- -uGCG-CUCGAAGCgucaGGCCcgucgaGGCGUCa -3'
miRNA:   3'- auCGCaGAGCUUCGag--CUGG------UCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 23825 0.67 0.618007
Target:  5'- gAGCGUCUCcaccgucgcgaugGAGGCagUCGccGCCAGCGcCc -3'
miRNA:   3'- aUCGCAGAG-------------CUUCG--AGC--UGGUCGCaG- -5'
16286 5' -55.8 NC_004084.1 + 27475 0.68 0.521402
Target:  5'- cGGCGUcCUCG-AGCUCGACgucgacgaGGCGaUCg -3'
miRNA:   3'- aUCGCA-GAGCuUCGAGCUGg-------UCGC-AG- -5'
16286 5' -55.8 NC_004084.1 + 27629 0.67 0.60809
Target:  5'- cAGCGUCUCGc-GCUgGAUC-GCGUa -3'
miRNA:   3'- aUCGCAGAGCuuCGAgCUGGuCGCAg -5'
16286 5' -55.8 NC_004084.1 + 27788 0.69 0.490072
Target:  5'- cAGCGUCgucgCGAA-CUCGuagUCGGCGUCg -3'
miRNA:   3'- aUCGCAGa---GCUUcGAGCu--GGUCGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.