miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16286 5' -55.8 NC_004084.1 + 38336 0.68 0.56431
Target:  5'- cGGuCGUCUUccGGUUCGcuCCGGCGUCg -3'
miRNA:   3'- aUC-GCAGAGcuUCGAGCu-GGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 45478 0.68 0.56431
Target:  5'- gAGC--CUCGuucGGCgUCGAUCAGCGUCu -3'
miRNA:   3'- aUCGcaGAGCu--UCG-AGCUGGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 17213 0.68 0.553482
Target:  5'- cGGCGUUUCGccAGCgUCG-CgGGCGUCg -3'
miRNA:   3'- aUCGCAGAGCu-UCG-AGCuGgUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 50592 0.68 0.542716
Target:  5'- gAGCGgaUCUgGGAGCgugccuCCAGCGUCg -3'
miRNA:   3'- aUCGC--AGAgCUUCGagcu--GGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 43642 0.68 0.53202
Target:  5'- gGGCGUCUCGAuaGGCaCGaACgGGCGg- -3'
miRNA:   3'- aUCGCAGAGCU--UCGaGC-UGgUCGCag -5'
16286 5' -55.8 NC_004084.1 + 27475 0.68 0.521402
Target:  5'- cGGCGUcCUCG-AGCUCGACgucgacgaGGCGaUCg -3'
miRNA:   3'- aUCGCA-GAGCuUCGAGCUGg-------UCGC-AG- -5'
16286 5' -55.8 NC_004084.1 + 21013 0.69 0.510867
Target:  5'- aAGCGUC-Cauca-UCGGCCAGCGUCu -3'
miRNA:   3'- aUCGCAGaGcuucgAGCUGGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 27788 0.69 0.490072
Target:  5'- cAGCGUCgucgCGAA-CUCGuagUCGGCGUCg -3'
miRNA:   3'- aUCGCAGa---GCUUcGAGCu--GGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 52602 0.69 0.479822
Target:  5'- cGGUGggUCGAGGCagUCGAcacgcCCGGCGUCg -3'
miRNA:   3'- aUCGCagAGCUUCG--AGCU-----GGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 23613 0.69 0.469679
Target:  5'- -uGCG-CUCGAAGCgucaGGCCcgucgaGGCGUCa -3'
miRNA:   3'- auCGCaGAGCUUCGag--CUGG------UCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 4106 0.69 0.469679
Target:  5'- cAGCGUCUCGAuG-UCGAUCAcGaCGUCg -3'
miRNA:   3'- aUCGCAGAGCUuCgAGCUGGU-C-GCAG- -5'
16286 5' -55.8 NC_004084.1 + 36409 0.7 0.449729
Target:  5'- gAGUGUgUCGAuGUUCGuCCGcGCGUCg -3'
miRNA:   3'- aUCGCAgAGCUuCGAGCuGGU-CGCAG- -5'
16286 5' -55.8 NC_004084.1 + 6998 0.7 0.420704
Target:  5'- cAGCGUgucgccCUCGAAGgcCUCGA-CGGCGUCg -3'
miRNA:   3'- aUCGCA------GAGCUUC--GAGCUgGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 33609 0.7 0.419756
Target:  5'- gUGGCGUCUCGAucGGCgcaCGAUCAGUccucuucgagaagGUCu -3'
miRNA:   3'- -AUCGCAGAGCU--UCGa--GCUGGUCG-------------CAG- -5'
16286 5' -55.8 NC_004084.1 + 12901 0.72 0.340839
Target:  5'- cGGCGUcCUCGGAGUggcCGACCGGCc-- -3'
miRNA:   3'- aUCGCA-GAGCUUCGa--GCUGGUCGcag -5'
16286 5' -55.8 NC_004084.1 + 21901 0.72 0.325444
Target:  5'- cGGCGUCUCGGucggccuccucaucgAGUUCGACgucgaggaaauuguCGGCGUCc -3'
miRNA:   3'- aUCGCAGAGCU---------------UCGAGCUG--------------GUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 30694 0.73 0.301447
Target:  5'- cAGCGUCUCGccuGGCUCcucacccggGAaCAGCGUCg -3'
miRNA:   3'- aUCGCAGAGCu--UCGAG---------CUgGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 45648 0.74 0.243979
Target:  5'- cGGCGUCUCGGAuGC-CGACaacgacgagacgguCGGCGUCg -3'
miRNA:   3'- aUCGCAGAGCUU-CGaGCUG--------------GUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 38896 0.83 0.064699
Target:  5'- cAGCGUCUUcGAGCUCGaACCGGCGUUg -3'
miRNA:   3'- aUCGCAGAGcUUCGAGC-UGGUCGCAG- -5'
16286 5' -55.8 NC_004084.1 + 40732 1.08 0.000917
Target:  5'- gUAGCGUCUCGAAGCUCGACCAGCGUCg -3'
miRNA:   3'- -AUCGCAGAGCUUCGAGCUGGUCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.