miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16288 5' -60.3 NC_004084.1 + 29401 0.66 0.470603
Target:  5'- gGGCG-GCCACUCCUgGGGCgUCgcgguugCCGu -3'
miRNA:   3'- gCCGCaUGGUGAGGG-UCCGgAGa------GGU- -5'
16288 5' -60.3 NC_004084.1 + 15444 0.66 0.441912
Target:  5'- aGGCGUugCGCUCUCGGGgacaCUCg--- -3'
miRNA:   3'- gCCGCAugGUGAGGGUCCg---GAGaggu -5'
16288 5' -60.3 NC_004084.1 + 56142 0.66 0.440973
Target:  5'- uCGGCGUcgACCAgccccauCUCCUccagcuuucggAGGCCcuUCUCCGc -3'
miRNA:   3'- -GCCGCA--UGGU-------GAGGG-----------UCCGG--AGAGGU- -5'
16288 5' -60.3 NC_004084.1 + 15218 0.66 0.43257
Target:  5'- uCGGCGUcucACCGggcaucguccacCUCCuCGGGCgaCUCCGu -3'
miRNA:   3'- -GCCGCA---UGGU------------GAGG-GUCCGgaGAGGU- -5'
16288 5' -60.3 NC_004084.1 + 1412 0.67 0.405252
Target:  5'- cCGGCGUcGCCAUUCUC-GGCgUCgCCGu -3'
miRNA:   3'- -GCCGCA-UGGUGAGGGuCCGgAGaGGU- -5'
16288 5' -60.3 NC_004084.1 + 29944 0.67 0.405252
Target:  5'- uGGCuccGUGCCAgUCCCAGGUgaUgUCCu -3'
miRNA:   3'- gCCG---CAUGGUgAGGGUCCGg-AgAGGu -5'
16288 5' -60.3 NC_004084.1 + 38915 0.67 0.39639
Target:  5'- cCGGCGUu--GCUCCCGGGCUccugCUCg- -3'
miRNA:   3'- -GCCGCAuggUGAGGGUCCGGa---GAGgu -5'
16288 5' -60.3 NC_004084.1 + 14451 0.7 0.25933
Target:  5'- aGaGCGUcguucccucGCC-CUCCCAGGCCgcCUCCu -3'
miRNA:   3'- gC-CGCA---------UGGuGAGGGUCCGGa-GAGGu -5'
16288 5' -60.3 NC_004084.1 + 23986 0.71 0.228825
Target:  5'- gGGUGU-UCAUUCCUGGGCCUCUUUg -3'
miRNA:   3'- gCCGCAuGGUGAGGGUCCGGAGAGGu -5'
16288 5' -60.3 NC_004084.1 + 12861 0.73 0.167853
Target:  5'- uCGGCGUAcuCCGCUUCgAGGuCCUCgcgCCAa -3'
miRNA:   3'- -GCCGCAU--GGUGAGGgUCC-GGAGa--GGU- -5'
16288 5' -60.3 NC_004084.1 + 10915 0.73 0.167853
Target:  5'- aGGCGcUGCCACUCgaGGGCCUCgaggUCAa -3'
miRNA:   3'- gCCGC-AUGGUGAGggUCCGGAGa---GGU- -5'
16288 5' -60.3 NC_004084.1 + 39529 1.08 0.000415
Target:  5'- uCGGCGUACCACUCCCAGGCCUCUCCAg -3'
miRNA:   3'- -GCCGCAUGGUGAGGGUCCGGAGAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.