miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16289 3' -59.3 NC_004084.1 + 22470 0.66 0.553137
Target:  5'- cGACGGCUGCGUggugGCGGcUCCa- -3'
miRNA:   3'- uCUGCCGGCGCGggaaUGCCuAGGcu -5'
16289 3' -59.3 NC_004084.1 + 51525 0.66 0.553137
Target:  5'- gAGACGGUCGCGauCCCgacguaccuCGGcAUCCa- -3'
miRNA:   3'- -UCUGCCGGCGC--GGGaau------GCC-UAGGcu -5'
16289 3' -59.3 NC_004084.1 + 18707 0.66 0.532489
Target:  5'- cGACGGCguCGuCGCCgUcacugGCGGGUUCGGu -3'
miRNA:   3'- uCUGCCG--GC-GCGGgAa----UGCCUAGGCU- -5'
16289 3' -59.3 NC_004084.1 + 2953 0.66 0.512124
Target:  5'- gGGAUGGauCCG-GCCCUgGCGGAUCa-- -3'
miRNA:   3'- -UCUGCC--GGCgCGGGAaUGCCUAGgcu -5'
16289 3' -59.3 NC_004084.1 + 47364 0.66 0.512124
Target:  5'- cGGCGGCCGC-CCCUU-CG--UCCGc -3'
miRNA:   3'- uCUGCCGGCGcGGGAAuGCcuAGGCu -5'
16289 3' -59.3 NC_004084.1 + 30295 0.67 0.482206
Target:  5'- gGGAaGGCCGCGaaauuuaCUUACGGAUgCGc -3'
miRNA:   3'- -UCUgCCGGCGCgg-----GAAUGCCUAgGCu -5'
16289 3' -59.3 NC_004084.1 + 7438 0.67 0.472421
Target:  5'- cGACGGUgGCGagaCCU--CGGAgUCCGAc -3'
miRNA:   3'- uCUGCCGgCGCg--GGAauGCCU-AGGCU- -5'
16289 3' -59.3 NC_004084.1 + 7596 0.67 0.453158
Target:  5'- aGGuuGuGCCgGCGCCCgcgaACGGGUCCa- -3'
miRNA:   3'- -UCugC-CGG-CGCGGGaa--UGCCUAGGcu -5'
16289 3' -59.3 NC_004084.1 + 13989 0.68 0.432474
Target:  5'- -cGCGGCCGUGCUCguccguucggaACGGGUugCCGAg -3'
miRNA:   3'- ucUGCCGGCGCGGGaa---------UGCCUA--GGCU- -5'
16289 3' -59.3 NC_004084.1 + 43564 0.69 0.347494
Target:  5'- cGGCGGCCGUcauCCCgacgaggcGCGGAUCCu- -3'
miRNA:   3'- uCUGCCGGCGc--GGGaa------UGCCUAGGcu -5'
16289 3' -59.3 NC_004084.1 + 36047 0.7 0.301669
Target:  5'- aGGACGGCCGCauaCCCUggUGgGGAUacgaCGAg -3'
miRNA:   3'- -UCUGCCGGCGc--GGGA--AUgCCUAg---GCU- -5'
16289 3' -59.3 NC_004084.1 + 56877 0.71 0.287465
Target:  5'- cGACGGCCGUGCCU---CGG-UCCa- -3'
miRNA:   3'- uCUGCCGGCGCGGGaauGCCuAGGcu -5'
16289 3' -59.3 NC_004084.1 + 1554 0.75 0.144016
Target:  5'- cGACGGCCGUcgagccggaGCCCgcgaACGGGUCCa- -3'
miRNA:   3'- uCUGCCGGCG---------CGGGaa--UGCCUAGGcu -5'
16289 3' -59.3 NC_004084.1 + 39352 1.08 0.000544
Target:  5'- uAGACGGCCGCGCCCUUACGGAUCCGAg -3'
miRNA:   3'- -UCUGCCGGCGCGGGAAUGCCUAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.