miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1629 3' -44.8 NC_001347.2 + 121455 0.66 1
Target:  5'- aCACG-C-CACACGGUGuGAUggUACUa -3'
miRNA:   3'- -GUGCuGuGUGUGUCACcUUAaaAUGG- -5'
1629 3' -44.8 NC_001347.2 + 54498 0.67 1
Target:  5'- uCAUGuCGCGCgAUAGUGGug-UUUAUCg -3'
miRNA:   3'- -GUGCuGUGUG-UGUCACCuuaAAAUGG- -5'
1629 3' -44.8 NC_001347.2 + 78378 0.67 1
Target:  5'- gGCGGCGC-CGUGGUGGGAgg--ACCc -3'
miRNA:   3'- gUGCUGUGuGUGUCACCUUaaaaUGG- -5'
1629 3' -44.8 NC_001347.2 + 190086 0.67 1
Target:  5'- gCACGACGgGCaugaaaACGGUGGcuUUcgACCu -3'
miRNA:   3'- -GUGCUGUgUG------UGUCACCuuAAaaUGG- -5'
1629 3' -44.8 NC_001347.2 + 169132 0.67 1
Target:  5'- gCGCGcCGCGCuGCAGUGGcugg--ACCu -3'
miRNA:   3'- -GUGCuGUGUG-UGUCACCuuaaaaUGG- -5'
1629 3' -44.8 NC_001347.2 + 142594 0.66 1
Target:  5'- gGCGGCGgGgGCAGcGGGuuaUUGCCg -3'
miRNA:   3'- gUGCUGUgUgUGUCaCCUuaaAAUGG- -5'
1629 3' -44.8 NC_001347.2 + 154826 0.66 1
Target:  5'- aGCGGCGCGCACAGUc-------GCCg -3'
miRNA:   3'- gUGCUGUGUGUGUCAccuuaaaaUGG- -5'
1629 3' -44.8 NC_001347.2 + 40939 0.66 1
Target:  5'- gACGAagaacacCGCACACAGaUGGAGcucgacGCCg -3'
miRNA:   3'- gUGCU-------GUGUGUGUC-ACCUUaaaa--UGG- -5'
1629 3' -44.8 NC_001347.2 + 108936 0.66 1
Target:  5'- gCACGuCACGCugGgcucugacGUGGAAgaggACCu -3'
miRNA:   3'- -GUGCuGUGUGugU--------CACCUUaaaaUGG- -5'
1629 3' -44.8 NC_001347.2 + 75729 0.66 1
Target:  5'- uCACGGCuaucGgGCGCAGUGGugg--UAUCa -3'
miRNA:   3'- -GUGCUG----UgUGUGUCACCuuaaaAUGG- -5'
1629 3' -44.8 NC_001347.2 + 105603 0.66 1
Target:  5'- -cUGACGCugGgcCAGUGGGAgcuggUGCUg -3'
miRNA:   3'- guGCUGUGugU--GUCACCUUaaa--AUGG- -5'
1629 3' -44.8 NC_001347.2 + 170664 0.66 1
Target:  5'- gACGGCGCGuuuuGUGGAAUUg-GCCg -3'
miRNA:   3'- gUGCUGUGUguguCACCUUAAaaUGG- -5'
1629 3' -44.8 NC_001347.2 + 41675 0.66 1
Target:  5'- gCugGGCACaACGCGGUGaacguggcgcguGGAUgccgGCCg -3'
miRNA:   3'- -GugCUGUG-UGUGUCAC------------CUUAaaa-UGG- -5'
1629 3' -44.8 NC_001347.2 + 89751 0.66 1
Target:  5'- uGCGGCGucgGCGCAG-GGAAUUcguaGCCg -3'
miRNA:   3'- gUGCUGUg--UGUGUCaCCUUAAaa--UGG- -5'
1629 3' -44.8 NC_001347.2 + 158516 0.66 1
Target:  5'- gCGCGGCACGCACcugcgacuccacuguGGUGGuacgcgACg -3'
miRNA:   3'- -GUGCUGUGUGUG---------------UCACCuuaaaaUGg -5'
1629 3' -44.8 NC_001347.2 + 34944 0.66 1
Target:  5'- -gUGACGCACACcGUGGAu------- -3'
miRNA:   3'- guGCUGUGUGUGuCACCUuaaaaugg -5'
1629 3' -44.8 NC_001347.2 + 28585 0.68 0.999999
Target:  5'- cCGCGACACAUuaACGGUGc---UUUAUCg -3'
miRNA:   3'- -GUGCUGUGUG--UGUCACcuuaAAAUGG- -5'
1629 3' -44.8 NC_001347.2 + 123852 0.67 0.999999
Target:  5'- aAUGcCACACGCAGcUGGccUUUUACa -3'
miRNA:   3'- gUGCuGUGUGUGUC-ACCuuAAAAUGg -5'
1629 3' -44.8 NC_001347.2 + 39712 0.67 0.999999
Target:  5'- -uUGGCGcCACGCAGUcuGGAAg---GCCg -3'
miRNA:   3'- guGCUGU-GUGUGUCA--CCUUaaaaUGG- -5'
1629 3' -44.8 NC_001347.2 + 37393 0.67 0.999999
Target:  5'- --gGACGCGCACAacGGGAUg--ACCu -3'
miRNA:   3'- gugCUGUGUGUGUcaCCUUAaaaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.