miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1629 5' -67.4 NC_001347.2 + 27110 0.66 0.516042
Target:  5'- uGGGCuuCCCUCCUGCagcugcaccacGGCCUuaugUGGCu -3'
miRNA:   3'- uCCCGcuGGGAGGGCGc----------CCGGG----ACCG- -5'
1629 5' -67.4 NC_001347.2 + 154905 0.66 0.504636
Target:  5'- -aGGCGGCCgaagcgCCgGCGGGUCCUacguugcuacugccGGCg -3'
miRNA:   3'- ucCCGCUGGga----GGgCGCCCGGGA--------------CCG- -5'
1629 5' -67.4 NC_001347.2 + 13512 0.66 0.49854
Target:  5'- cGGGUGcucACCCg-CCGgGcGGCCCgGGCc -3'
miRNA:   3'- uCCCGC---UGGGagGGCgC-CCGGGaCCG- -5'
1629 5' -67.4 NC_001347.2 + 157026 0.66 0.49854
Target:  5'- --uGCGACUCUgggCCCGCuGGUgCUGGCu -3'
miRNA:   3'- uccCGCUGGGA---GGGCGcCCGgGACCG- -5'
1629 5' -67.4 NC_001347.2 + 36692 0.66 0.489888
Target:  5'- cGGGUGGCCUgagCaCGcCGaGGCCCagUGGCg -3'
miRNA:   3'- uCCCGCUGGGa--GgGC-GC-CCGGG--ACCG- -5'
1629 5' -67.4 NC_001347.2 + 8602 0.66 0.489888
Target:  5'- uGGGUG-CCCgUCaCGCaGGCgCUGGCg -3'
miRNA:   3'- uCCCGCuGGG-AGgGCGcCCGgGACCG- -5'
1629 5' -67.4 NC_001347.2 + 5803 0.67 0.481308
Target:  5'- -uGGCGGCCCUCCguuCGgcuCGGGUCgUGGg -3'
miRNA:   3'- ucCCGCUGGGAGG---GC---GCCCGGgACCg -5'
1629 5' -67.4 NC_001347.2 + 39520 0.67 0.46437
Target:  5'- gGGGGCGcggcgacauGCCgUUgCGCuGGGCCaugGGCg -3'
miRNA:   3'- -UCCCGC---------UGGgAGgGCG-CCCGGga-CCG- -5'
1629 5' -67.4 NC_001347.2 + 171324 0.67 0.447749
Target:  5'- uGGGCGGCCuguCUCCCgGCGGcucucggaCCUGGg -3'
miRNA:   3'- uCCCGCUGG---GAGGG-CGCCcg------GGACCg -5'
1629 5' -67.4 NC_001347.2 + 104536 0.68 0.415528
Target:  5'- cGGGCGugCCUCCUGCa--UgCUGGCc -3'
miRNA:   3'- uCCCGCugGGAGGGCGcccGgGACCG- -5'
1629 5' -67.4 NC_001347.2 + 117880 0.68 0.407697
Target:  5'- cGGGGCGACCacgUCagacggggcggCgGCGGGUCCcgugaUGGCa -3'
miRNA:   3'- -UCCCGCUGGg--AG-----------GgCGCCCGGG-----ACCG- -5'
1629 5' -67.4 NC_001347.2 + 36551 0.68 0.39996
Target:  5'- -cGGCGuguccaGCCUUCCCauGCGGGaacuggCCUGGCg -3'
miRNA:   3'- ucCCGC------UGGGAGGG--CGCCCg-----GGACCG- -5'
1629 5' -67.4 NC_001347.2 + 109490 0.69 0.355555
Target:  5'- cGGGCGccuCCaCUUCCGCGGGCCgCaaacGCa -3'
miRNA:   3'- uCCCGCu--GG-GAGGGCGCCCGG-Gac--CG- -5'
1629 5' -67.4 NC_001347.2 + 163694 0.69 0.3485
Target:  5'- -aGGCGACCCUCguuuugCUGCGuGGCUugCUGGUa -3'
miRNA:   3'- ucCCGCUGGGAG------GGCGC-CCGG--GACCG- -5'
1629 5' -67.4 NC_001347.2 + 114086 0.69 0.332655
Target:  5'- uGGcccGCGacgaagagaaccccGCCgUCCCGCGGGUCCgcacgGGCa -3'
miRNA:   3'- uCC---CGC--------------UGGgAGGGCGCCCGGGa----CCG- -5'
1629 5' -67.4 NC_001347.2 + 78377 0.7 0.319969
Target:  5'- -cGGCGGCgCCguggugggaggaCCCGCGGGCCaCgucgGGCu -3'
miRNA:   3'- ucCCGCUG-GGa-----------GGGCGCCCGG-Ga---CCG- -5'
1629 5' -67.4 NC_001347.2 + 140403 0.7 0.301941
Target:  5'- cGGGuGCGcACCCgcuugCCCGUGGuGCCCaaGCa -3'
miRNA:   3'- -UCC-CGC-UGGGa----GGGCGCC-CGGGacCG- -5'
1629 5' -67.4 NC_001347.2 + 88601 0.7 0.294458
Target:  5'- uGGGCGACCUgagcggcggcggCCUGCGcGGCCUgcaccgcGGCu -3'
miRNA:   3'- uCCCGCUGGGa-----------GGGCGC-CCGGGa------CCG- -5'
1629 5' -67.4 NC_001347.2 + 39341 0.72 0.238715
Target:  5'- aGGGGCG-CCCggcggCCCGCGGGguucuaCCC-GGUg -3'
miRNA:   3'- -UCCCGCuGGGa----GGGCGCCC------GGGaCCG- -5'
1629 5' -67.4 NC_001347.2 + 160341 0.74 0.170715
Target:  5'- aAGGGCGguguGCUUUUuuGCGGGCcuaCCUGGCa -3'
miRNA:   3'- -UCCCGC----UGGGAGggCGCCCG---GGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.