Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1629 | 5' | -67.4 | NC_001347.2 | + | 27110 | 0.66 | 0.516042 |
Target: 5'- uGGGCuuCCCUCCUGCagcugcaccacGGCCUuaugUGGCu -3' miRNA: 3'- uCCCGcuGGGAGGGCGc----------CCGGG----ACCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 13512 | 0.66 | 0.49854 |
Target: 5'- cGGGUGcucACCCg-CCGgGcGGCCCgGGCc -3' miRNA: 3'- uCCCGC---UGGGagGGCgC-CCGGGaCCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 154905 | 0.66 | 0.504636 |
Target: 5'- -aGGCGGCCgaagcgCCgGCGGGUCCUacguugcuacugccGGCg -3' miRNA: 3'- ucCCGCUGGga----GGgCGCCCGGGA--------------CCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 157026 | 0.66 | 0.49854 |
Target: 5'- --uGCGACUCUgggCCCGCuGGUgCUGGCu -3' miRNA: 3'- uccCGCUGGGA---GGGCGcCCGgGACCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 36692 | 0.66 | 0.489888 |
Target: 5'- cGGGUGGCCUgagCaCGcCGaGGCCCagUGGCg -3' miRNA: 3'- uCCCGCUGGGa--GgGC-GC-CCGGG--ACCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 8602 | 0.66 | 0.489888 |
Target: 5'- uGGGUG-CCCgUCaCGCaGGCgCUGGCg -3' miRNA: 3'- uCCCGCuGGG-AGgGCGcCCGgGACCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 39520 | 0.67 | 0.46437 |
Target: 5'- gGGGGCGcggcgacauGCCgUUgCGCuGGGCCaugGGCg -3' miRNA: 3'- -UCCCGC---------UGGgAGgGCG-CCCGGga-CCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 171324 | 0.67 | 0.447749 |
Target: 5'- uGGGCGGCCuguCUCCCgGCGGcucucggaCCUGGg -3' miRNA: 3'- uCCCGCUGG---GAGGG-CGCCcg------GGACCg -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 5803 | 0.67 | 0.481308 |
Target: 5'- -uGGCGGCCCUCCguuCGgcuCGGGUCgUGGg -3' miRNA: 3'- ucCCGCUGGGAGG---GC---GCCCGGgACCg -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 117880 | 0.68 | 0.407697 |
Target: 5'- cGGGGCGACCacgUCagacggggcggCgGCGGGUCCcgugaUGGCa -3' miRNA: 3'- -UCCCGCUGGg--AG-----------GgCGCCCGGG-----ACCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 36551 | 0.68 | 0.39996 |
Target: 5'- -cGGCGuguccaGCCUUCCCauGCGGGaacuggCCUGGCg -3' miRNA: 3'- ucCCGC------UGGGAGGG--CGCCCg-----GGACCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 104536 | 0.68 | 0.415528 |
Target: 5'- cGGGCGugCCUCCUGCa--UgCUGGCc -3' miRNA: 3'- uCCCGCugGGAGGGCGcccGgGACCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 109490 | 0.69 | 0.355555 |
Target: 5'- cGGGCGccuCCaCUUCCGCGGGCCgCaaacGCa -3' miRNA: 3'- uCCCGCu--GG-GAGGGCGCCCGG-Gac--CG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 163694 | 0.69 | 0.3485 |
Target: 5'- -aGGCGACCCUCguuuugCUGCGuGGCUugCUGGUa -3' miRNA: 3'- ucCCGCUGGGAG------GGCGC-CCGG--GACCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 114086 | 0.69 | 0.332655 |
Target: 5'- uGGcccGCGacgaagagaaccccGCCgUCCCGCGGGUCCgcacgGGCa -3' miRNA: 3'- uCC---CGC--------------UGGgAGGGCGCCCGGGa----CCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 140403 | 0.7 | 0.301941 |
Target: 5'- cGGGuGCGcACCCgcuugCCCGUGGuGCCCaaGCa -3' miRNA: 3'- -UCC-CGC-UGGGa----GGGCGCC-CGGGacCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 88601 | 0.7 | 0.294458 |
Target: 5'- uGGGCGACCUgagcggcggcggCCUGCGcGGCCUgcaccgcGGCu -3' miRNA: 3'- uCCCGCUGGGa-----------GGGCGC-CCGGGa------CCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 78377 | 0.7 | 0.319969 |
Target: 5'- -cGGCGGCgCCguggugggaggaCCCGCGGGCCaCgucgGGCu -3' miRNA: 3'- ucCCGCUG-GGa-----------GGGCGCCCGG-Ga---CCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 39341 | 0.72 | 0.238715 |
Target: 5'- aGGGGCG-CCCggcggCCCGCGGGguucuaCCC-GGUg -3' miRNA: 3'- -UCCCGCuGGGa----GGGCGCCC------GGGaCCG- -5' |
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1629 | 5' | -67.4 | NC_001347.2 | + | 160341 | 0.74 | 0.170715 |
Target: 5'- aAGGGCGguguGCUUUUuuGCGGGCcuaCCUGGCa -3' miRNA: 3'- -UCCCGC----UGGGAGggCGCCCG---GGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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