Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16290 | 3' | -57.5 | NC_004084.1 | + | 7871 | 0.66 | 0.657701 |
Target: 5'- uACACCUCGAUCGccCGGcGAagcugcUCGCGAUc -3' miRNA: 3'- -UGUGGGGCUAGCu-GCCcCU------AGUGCUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 44031 | 0.66 | 0.657701 |
Target: 5'- uCGCCCCGAucUCGcCGaguGGGAggugCGCGAa -3' miRNA: 3'- uGUGGGGCU--AGCuGC---CCCUa---GUGCUg -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 45171 | 0.66 | 0.647014 |
Target: 5'- -gAUCCCGA-CGACGGuGAgUACGGCa -3' miRNA: 3'- ugUGGGGCUaGCUGCCcCUaGUGCUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 34798 | 0.66 | 0.645944 |
Target: 5'- gACGCCUCGAcgggccugacgcuUCGAgcgcaguuccCGGcGGAgCACGACg -3' miRNA: 3'- -UGUGGGGCU-------------AGCU----------GCC-CCUaGUGCUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 31135 | 0.66 | 0.62561 |
Target: 5'- gGCGCCgCGAUCGucaGCGGuucGGAcCGCGAg -3' miRNA: 3'- -UGUGGgGCUAGC---UGCC---CCUaGUGCUg -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 37462 | 0.66 | 0.62561 |
Target: 5'- cGCAUCCCGAcccCGACGu-GAUCACGGu -3' miRNA: 3'- -UGUGGGGCUa--GCUGCccCUAGUGCUg -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 38368 | 0.66 | 0.614911 |
Target: 5'- cUACgCCgGAUCGAgCGcGGGAagGCGACc -3' miRNA: 3'- uGUG-GGgCUAGCU-GC-CCCUagUGCUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 12111 | 0.66 | 0.614911 |
Target: 5'- cACGCUCuCGAUCauccuGACGGGGuUCuuGACc -3' miRNA: 3'- -UGUGGG-GCUAG-----CUGCCCCuAGugCUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 29666 | 0.66 | 0.604227 |
Target: 5'- uCGCgCCGGUagcucCGGGGGUuCGCGACg -3' miRNA: 3'- uGUGgGGCUAgcu--GCCCCUA-GUGCUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 51340 | 0.66 | 0.604227 |
Target: 5'- uCGCCCUGAUUGuccACGaaccgcuGGAUCGCGGCc -3' miRNA: 3'- uGUGGGGCUAGC---UGCc------CCUAGUGCUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 23862 | 0.67 | 0.572344 |
Target: 5'- aGCGCCCucgCGAUgGACGcGGuGAUCGCuucaGACg -3' miRNA: 3'- -UGUGGG---GCUAgCUGC-CC-CUAGUG----CUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 43573 | 0.67 | 0.571287 |
Target: 5'- uCAUCCCGAcgaGGCGcggauccuccaguGGGAUCGCGAg -3' miRNA: 3'- uGUGGGGCUag-CUGC-------------CCCUAGUGCUg -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 49960 | 0.67 | 0.561798 |
Target: 5'- -aGCCCCGAUCcuauGAUGGGGAagcugaACGGg -3' miRNA: 3'- ugUGGGGCUAG----CUGCCCCUag----UGCUg -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 8402 | 0.67 | 0.561798 |
Target: 5'- gACACCCCGcUCGGCGacaacGuGAUCAUGGg -3' miRNA: 3'- -UGUGGGGCuAGCUGCc----C-CUAGUGCUg -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 22896 | 0.68 | 0.545039 |
Target: 5'- aACACCCaggaccaagaggucgCGAUCGGguGGGAUCcCGACg -3' miRNA: 3'- -UGUGGG---------------GCUAGCUgcCCCUAGuGCUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 22444 | 0.68 | 0.520219 |
Target: 5'- aAUACCgCCG-UCuuCGGGGGcgcUCGCGACg -3' miRNA: 3'- -UGUGG-GGCuAGcuGCCCCU---AGUGCUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 30323 | 0.68 | 0.520219 |
Target: 5'- cGCACCCCGAaccguugaccgUCGGCGaGGuGGcCgACGGCg -3' miRNA: 3'- -UGUGGGGCU-----------AGCUGC-CC-CUaG-UGCUG- -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 21261 | 0.68 | 0.520219 |
Target: 5'- aACGCCCCGAgcUCGucGCGauGAUCACGGa -3' miRNA: 3'- -UGUGGGGCU--AGC--UGCccCUAGUGCUg -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 6775 | 0.68 | 0.499879 |
Target: 5'- gGCAgUCCGAggucUCGGCGGGGAcguUCuCGAa -3' miRNA: 3'- -UGUgGGGCU----AGCUGCCCCU---AGuGCUg -5' |
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16290 | 3' | -57.5 | NC_004084.1 | + | 36057 | 0.68 | 0.498871 |
Target: 5'- cAUACCCUGGUggggauaCGACGaGGAcCGCGACg -3' miRNA: 3'- -UGUGGGGCUA-------GCUGCcCCUaGUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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