miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16290 3' -57.5 NC_004084.1 + 3477 0.7 0.386572
Target:  5'- cGCAUCCCGA--GGCGGaGGAUCcCGAUc -3'
miRNA:   3'- -UGUGGGGCUagCUGCC-CCUAGuGCUG- -5'
16290 3' -57.5 NC_004084.1 + 4822 0.75 0.189555
Target:  5'- -gGgCCgGAUCGGCGGGGAgagUCAUGACc -3'
miRNA:   3'- ugUgGGgCUAGCUGCCCCU---AGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 6775 0.68 0.499879
Target:  5'- gGCAgUCCGAggucUCGGCGGGGAcguUCuCGAa -3'
miRNA:   3'- -UGUgGGGCU----AGCUGCCCCU---AGuGCUg -5'
16290 3' -57.5 NC_004084.1 + 6867 0.69 0.483865
Target:  5'- -aACCuccagCCGGUCGugGaugccgagguacgucGGGAUCGCGACc -3'
miRNA:   3'- ugUGG-----GGCUAGCugC---------------CCCUAGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 7871 0.66 0.657701
Target:  5'- uACACCUCGAUCGccCGGcGAagcugcUCGCGAUc -3'
miRNA:   3'- -UGUGGGGCUAGCu-GCCcCU------AGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 8402 0.67 0.561798
Target:  5'- gACACCCCGcUCGGCGacaacGuGAUCAUGGg -3'
miRNA:   3'- -UGUGGGGCuAGCUGCc----C-CUAGUGCUg -5'
16290 3' -57.5 NC_004084.1 + 10080 0.71 0.352735
Target:  5'- aGCACgCCGAggaCGAaGGGGG-CGCGACg -3'
miRNA:   3'- -UGUGgGGCUa--GCUgCCCCUaGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 10244 0.69 0.470058
Target:  5'- uCGCCUggugagucgCGGUCGGCGuccGGAUCACGAUg -3'
miRNA:   3'- uGUGGG---------GCUAGCUGCc--CCUAGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 12111 0.66 0.614911
Target:  5'- cACGCUCuCGAUCauccuGACGGGGuUCuuGACc -3'
miRNA:   3'- -UGUGGG-GCUAG-----CUGCCCCuAGugCUG- -5'
16290 3' -57.5 NC_004084.1 + 16932 0.7 0.386572
Target:  5'- uGCGgUUCGGcaUCGGCGGGcGUCGCGACg -3'
miRNA:   3'- -UGUgGGGCU--AGCUGCCCcUAGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 18352 0.69 0.4799
Target:  5'- cCAUCCCGAcguUCG-CGGGG-UCgACGGCu -3'
miRNA:   3'- uGUGGGGCU---AGCuGCCCCuAG-UGCUG- -5'
16290 3' -57.5 NC_004084.1 + 18553 0.72 0.306023
Target:  5'- -aACUCgGGUgggcCGACGGGGAgaUCGCGACg -3'
miRNA:   3'- ugUGGGgCUA----GCUGCCCCU--AGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 21261 0.68 0.520219
Target:  5'- aACGCCCCGAgcUCGucGCGauGAUCACGGa -3'
miRNA:   3'- -UGUGGGGCU--AGC--UGCccCUAGUGCUg -5'
16290 3' -57.5 NC_004084.1 + 21751 0.7 0.386572
Target:  5'- -aACCCUGGaCGguuccACGGGGAUCgGCGGCa -3'
miRNA:   3'- ugUGGGGCUaGC-----UGCCCCUAG-UGCUG- -5'
16290 3' -57.5 NC_004084.1 + 22444 0.68 0.520219
Target:  5'- aAUACCgCCG-UCuuCGGGGGcgcUCGCGACg -3'
miRNA:   3'- -UGUGG-GGCuAGcuGCCCCU---AGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 22896 0.68 0.545039
Target:  5'- aACACCCaggaccaagaggucgCGAUCGGguGGGAUCcCGACg -3'
miRNA:   3'- -UGUGGG---------------GCUAGCUgcCCCUAGuGCUG- -5'
16290 3' -57.5 NC_004084.1 + 23862 0.67 0.572344
Target:  5'- aGCGCCCucgCGAUgGACGcGGuGAUCGCuucaGACg -3'
miRNA:   3'- -UGUGGG---GCUAgCUGC-CC-CUAGUG----CUG- -5'
16290 3' -57.5 NC_004084.1 + 29351 0.72 0.313468
Target:  5'- gACGcCCCCGA---GCGGGcGGUCGCGGCc -3'
miRNA:   3'- -UGU-GGGGCUagcUGCCC-CUAGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 29666 0.66 0.604227
Target:  5'- uCGCgCCGGUagcucCGGGGGUuCGCGACg -3'
miRNA:   3'- uGUGgGGCUAgcu--GCCCCUA-GUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 30024 0.7 0.403377
Target:  5'- uACGCgCCGAUCGaggucucGCGGGGGccgcUCGCGuCg -3'
miRNA:   3'- -UGUGgGGCUAGC-------UGCCCCU----AGUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.