miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16290 3' -57.5 NC_004084.1 + 10244 0.69 0.470058
Target:  5'- uCGCCUggugagucgCGGUCGGCGuccGGAUCACGAUg -3'
miRNA:   3'- uGUGGG---------GCUAGCUGCc--CCUAGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 48680 0.69 0.470058
Target:  5'- gACACCuCCGuaguaCGACGGGGccucgaAUCcgGCGACg -3'
miRNA:   3'- -UGUGG-GGCua---GCUGCCCC------UAG--UGCUG- -5'
16290 3' -57.5 NC_004084.1 + 21751 0.7 0.386572
Target:  5'- -aACCCUGGaCGguuccACGGGGAUCgGCGGCa -3'
miRNA:   3'- ugUGGGGCUaGC-----UGCCCCUAG-UGCUG- -5'
16290 3' -57.5 NC_004084.1 + 16932 0.7 0.386572
Target:  5'- uGCGgUUCGGcaUCGGCGGGcGUCGCGACg -3'
miRNA:   3'- -UGUgGGGCU--AGCUGCCCcUAGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 29351 0.72 0.313468
Target:  5'- gACGcCCCCGA---GCGGGcGGUCGCGGCc -3'
miRNA:   3'- -UGU-GGGGCUagcUGCCC-CUAGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 4822 0.75 0.189555
Target:  5'- -gGgCCgGAUCGGCGGGGAgagUCAUGACc -3'
miRNA:   3'- ugUgGGgCUAGCUGCCCCU---AGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 6867 0.69 0.483865
Target:  5'- -aACCuccagCCGGUCGugGaugccgagguacgucGGGAUCGCGACc -3'
miRNA:   3'- ugUGG-----GGCUAGCugC---------------CCCUAGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 22444 0.68 0.520219
Target:  5'- aAUACCgCCG-UCuuCGGGGGcgcUCGCGACg -3'
miRNA:   3'- -UGUGG-GGCuAGcuGCCCCU---AGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 30323 0.68 0.520219
Target:  5'- cGCACCCCGAaccguugaccgUCGGCGaGGuGGcCgACGGCg -3'
miRNA:   3'- -UGUGGGGCU-----------AGCUGC-CC-CUaG-UGCUG- -5'
16290 3' -57.5 NC_004084.1 + 21261 0.68 0.520219
Target:  5'- aACGCCCCGAgcUCGucGCGauGAUCACGGa -3'
miRNA:   3'- -UGUGGGGCU--AGC--UGCccCUAGUGCUg -5'
16290 3' -57.5 NC_004084.1 + 49960 0.67 0.561798
Target:  5'- -aGCCCCGAUCcuauGAUGGGGAagcugaACGGg -3'
miRNA:   3'- ugUGGGGCUAG----CUGCCCCUag----UGCUg -5'
16290 3' -57.5 NC_004084.1 + 51340 0.66 0.604227
Target:  5'- uCGCCCUGAUUGuccACGaaccgcuGGAUCGCGGCc -3'
miRNA:   3'- uGUGGGGCUAGC---UGCc------CCUAGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 12111 0.66 0.614911
Target:  5'- cACGCUCuCGAUCauccuGACGGGGuUCuuGACc -3'
miRNA:   3'- -UGUGGG-GCUAG-----CUGCCCCuAGugCUG- -5'
16290 3' -57.5 NC_004084.1 + 31135 0.66 0.62561
Target:  5'- gGCGCCgCGAUCGucaGCGGuucGGAcCGCGAg -3'
miRNA:   3'- -UGUGGgGCUAGC---UGCC---CCUaGUGCUg -5'
16290 3' -57.5 NC_004084.1 + 7871 0.66 0.657701
Target:  5'- uACACCUCGAUCGccCGGcGAagcugcUCGCGAUc -3'
miRNA:   3'- -UGUGGGGCUAGCu-GCCcCU------AGUGCUG- -5'
16290 3' -57.5 NC_004084.1 + 38998 1.09 0.000811
Target:  5'- aACACCCCGAUCGACGGGGAUCACGACu -3'
miRNA:   3'- -UGUGGGGCUAGCUGCCCCUAGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.