miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16291 3' -51.7 NC_004084.1 + 44360 0.66 0.922808
Target:  5'- aGUGCUU--CCAUGAcCUCuUCGUCUc -3'
miRNA:   3'- gCACGAAcuGGUGCUuGAGcAGCAGG- -5'
16291 3' -51.7 NC_004084.1 + 22322 0.66 0.921614
Target:  5'- cCGUGCcacucguaggaGACgGCGAcCUCGUCGcggUCCu -3'
miRNA:   3'- -GCACGaa---------CUGgUGCUuGAGCAGC---AGG- -5'
16291 3' -51.7 NC_004084.1 + 57774 0.66 0.916725
Target:  5'- --aGCUUGcggGCgAUGuccuuCUCGUCGUCCc -3'
miRNA:   3'- gcaCGAAC---UGgUGCuu---GAGCAGCAGG- -5'
16291 3' -51.7 NC_004084.1 + 46187 0.66 0.916725
Target:  5'- --aGCUgguaGGCgGCGAGaUCGUCGUCg -3'
miRNA:   3'- gcaCGAa---CUGgUGCUUgAGCAGCAGg -5'
16291 3' -51.7 NC_004084.1 + 19779 0.66 0.916725
Target:  5'- gGUGCUcacugcUGACCACcGGCUUcagccgcggggaGUCGuUCCg -3'
miRNA:   3'- gCACGA------ACUGGUGcUUGAG------------CAGC-AGG- -5'
16291 3' -51.7 NC_004084.1 + 54870 0.66 0.916102
Target:  5'- -aUGCUccUGGCCucuuCGAACUCGaggcgaucgggcaUCGUCa -3'
miRNA:   3'- gcACGA--ACUGGu---GCUUGAGC-------------AGCAGg -5'
16291 3' -51.7 NC_004084.1 + 42592 0.66 0.903729
Target:  5'- uCGUGCUacaacGACCAgGAGC-CGaCGUUCc -3'
miRNA:   3'- -GCACGAa----CUGGUgCUUGaGCaGCAGG- -5'
16291 3' -51.7 NC_004084.1 + 5153 0.67 0.889643
Target:  5'- aCGUcGCccGGCC-CGAuCUCGUCG-CCg -3'
miRNA:   3'- -GCA-CGaaCUGGuGCUuGAGCAGCaGG- -5'
16291 3' -51.7 NC_004084.1 + 53172 0.67 0.889643
Target:  5'- uCGUGUgc-GCCGCGAagccaACUUGUCGagucuUCCg -3'
miRNA:   3'- -GCACGaacUGGUGCU-----UGAGCAGC-----AGG- -5'
16291 3' -51.7 NC_004084.1 + 36456 0.67 0.8822
Target:  5'- cCGUGUc-GAUCucgGCGGAgaCGUCGUCCu -3'
miRNA:   3'- -GCACGaaCUGG---UGCUUgaGCAGCAGG- -5'
16291 3' -51.7 NC_004084.1 + 17503 0.67 0.8822
Target:  5'- uCGUGUUUGACgGCau-CcCGUCGUCg -3'
miRNA:   3'- -GCACGAACUGgUGcuuGaGCAGCAGg -5'
16291 3' -51.7 NC_004084.1 + 52585 0.67 0.8822
Target:  5'- aCGUGCUUGGUaaaGCGAcgcuuCUCGUUGUUg -3'
miRNA:   3'- -GCACGAACUGg--UGCUu----GAGCAGCAGg -5'
16291 3' -51.7 NC_004084.1 + 12728 0.67 0.874499
Target:  5'- -uUGCUUGucuccGCgCACGAuCUCGUCGacgCCg -3'
miRNA:   3'- gcACGAAC-----UG-GUGCUuGAGCAGCa--GG- -5'
16291 3' -51.7 NC_004084.1 + 31150 0.67 0.874499
Target:  5'- --aGCgguucgGACCGCGAGauCUCGUCGagcgcgguUCCg -3'
miRNA:   3'- gcaCGaa----CUGGUGCUU--GAGCAGC--------AGG- -5'
16291 3' -51.7 NC_004084.1 + 29055 0.67 0.866544
Target:  5'- -cUGCUggcaGGCCGCGAccgcccGCUCGggggCGUCg -3'
miRNA:   3'- gcACGAa---CUGGUGCU------UGAGCa---GCAGg -5'
16291 3' -51.7 NC_004084.1 + 29152 0.68 0.858344
Target:  5'- gGUGCUggugUGGuCgCGCGGGC-CGuUCGUCCa -3'
miRNA:   3'- gCACGA----ACU-G-GUGCUUGaGC-AGCAGG- -5'
16291 3' -51.7 NC_004084.1 + 45735 0.68 0.858344
Target:  5'- gGUGCUggucGGCUACGAaccaguccGCUCGaUCGggacgCCg -3'
miRNA:   3'- gCACGAa---CUGGUGCU--------UGAGC-AGCa----GG- -5'
16291 3' -51.7 NC_004084.1 + 1572 0.68 0.841234
Target:  5'- aGUGCUcUGGCC-CGAgGCUCGagGcCCg -3'
miRNA:   3'- gCACGA-ACUGGuGCU-UGAGCagCaGG- -5'
16291 3' -51.7 NC_004084.1 + 4307 0.7 0.743995
Target:  5'- --cGCcggUGAUCGCGGGCgUCGUCGagUCCg -3'
miRNA:   3'- gcaCGa--ACUGGUGCUUG-AGCAGC--AGG- -5'
16291 3' -51.7 NC_004084.1 + 23468 0.7 0.733456
Target:  5'- --cGCccgGACCGCGAuggACUCGaucagcgagUCGUCCa -3'
miRNA:   3'- gcaCGaa-CUGGUGCU---UGAGC---------AGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.