miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16291 5' -57.9 NC_004084.1 + 37740 0.66 0.633145
Target:  5'- cGGGaAUGUUGgucUCUUCGcCGAGCCAc- -3'
miRNA:   3'- aCCC-UGCAGC---AGGAGCaGCUCGGUcu -5'
16291 5' -57.9 NC_004084.1 + 53151 0.66 0.622472
Target:  5'- cGGGACGUCGUCgaCGa--GGCCGa- -3'
miRNA:   3'- aCCCUGCAGCAGgaGCagcUCGGUcu -5'
16291 5' -57.9 NC_004084.1 + 30111 0.66 0.622472
Target:  5'- -cGGACGUCG-CUggGgagCGGGCCGGGg -3'
miRNA:   3'- acCCUGCAGCaGGagCa--GCUCGGUCU- -5'
16291 5' -57.9 NC_004084.1 + 52589 0.66 0.622472
Target:  5'- cGGcGGCGUgGUCCgguggGUCGAGgCAGu -3'
miRNA:   3'- aCC-CUGCAgCAGGag---CAGCUCgGUCu -5'
16291 5' -57.9 NC_004084.1 + 31974 0.66 0.622472
Target:  5'- cGGGaACGaCGUCCUCGugaUCGAcCUGGAu -3'
miRNA:   3'- aCCC-UGCaGCAGGAGC---AGCUcGGUCU- -5'
16291 5' -57.9 NC_004084.1 + 57184 0.66 0.622472
Target:  5'- aUGGGcGCGaUCGcCCUCGaucccgccgcCGAGCCAGc -3'
miRNA:   3'- -ACCC-UGC-AGCaGGAGCa---------GCUCGGUCu -5'
16291 5' -57.9 NC_004084.1 + 52187 0.66 0.616071
Target:  5'- cGGGAuCGacgcuauccggaaucUCGaCCUCGUCGGG-CAGAu -3'
miRNA:   3'- aCCCU-GC---------------AGCaGGAGCAGCUCgGUCU- -5'
16291 5' -57.9 NC_004084.1 + 1495 0.66 0.601158
Target:  5'- cUGGuaGACGUCGcCCUCGagcUCGaAGCCGa- -3'
miRNA:   3'- -ACC--CUGCAGCaGGAGC---AGC-UCGGUcu -5'
16291 5' -57.9 NC_004084.1 + 45875 0.66 0.59478
Target:  5'- cGGGACGUCGUCgUCGcucaccugcaagcucUCGGauCCAGc -3'
miRNA:   3'- aCCCUGCAGCAGgAGC---------------AGCUc-GGUCu -5'
16291 5' -57.9 NC_004084.1 + 26382 0.66 0.590534
Target:  5'- cGGGAuCGUCGuagaggUCCUCGaaccCGAGCCc-- -3'
miRNA:   3'- aCCCU-GCAGC------AGGAGCa---GCUCGGucu -5'
16291 5' -57.9 NC_004084.1 + 39615 0.67 0.579943
Target:  5'- gUGGccGGCGaCGUCCUCGaCGAGUCGa- -3'
miRNA:   3'- -ACC--CUGCaGCAGGAGCaGCUCGGUcu -5'
16291 5' -57.9 NC_004084.1 + 19647 0.67 0.569393
Target:  5'- --cGACGauggCGUCCaUGUgGAGCCAGAa -3'
miRNA:   3'- accCUGCa---GCAGGaGCAgCUCGGUCU- -5'
16291 5' -57.9 NC_004084.1 + 12818 0.67 0.569393
Target:  5'- cGGGACGUUGUaCUUCGa-GAGCgGGu -3'
miRNA:   3'- aCCCUGCAGCA-GGAGCagCUCGgUCu -5'
16291 5' -57.9 NC_004084.1 + 53551 0.67 0.558891
Target:  5'- cGGGAacgagGUCGUCCUgcuUGUgGAgguGCCGGAu -3'
miRNA:   3'- aCCCUg----CAGCAGGA---GCAgCU---CGGUCU- -5'
16291 5' -57.9 NC_004084.1 + 57638 0.67 0.558891
Target:  5'- aGGucgcGCGUCG-CCUCGaCGAGCCGa- -3'
miRNA:   3'- aCCc---UGCAGCaGGAGCaGCUCGGUcu -5'
16291 5' -57.9 NC_004084.1 + 23089 0.67 0.558891
Target:  5'- gGuGGACGUCGgcgaCCUCGgauAGCCAGc -3'
miRNA:   3'- aC-CCUGCAGCa---GGAGCagcUCGGUCu -5'
16291 5' -57.9 NC_004084.1 + 5896 0.67 0.548444
Target:  5'- cGGGGa-UCGUCCUgacgcCGUaCGAGCUGGAc -3'
miRNA:   3'- aCCCUgcAGCAGGA-----GCA-GCUCGGUCU- -5'
16291 5' -57.9 NC_004084.1 + 47988 0.67 0.548444
Target:  5'- cGGGAUGUUGUUCUCGuccUCGA-CCAu- -3'
miRNA:   3'- aCCCUGCAGCAGGAGC---AGCUcGGUcu -5'
16291 5' -57.9 NC_004084.1 + 387 0.67 0.547403
Target:  5'- gGGGACGUCGccgCCgaugucgcagacgUCGUCGAuCUGGAc -3'
miRNA:   3'- aCCCUGCAGCa--GG-------------AGCAGCUcGGUCU- -5'
16291 5' -57.9 NC_004084.1 + 51691 0.67 0.538059
Target:  5'- cGGGACGUCGUUCcCGUa---CCGGAc -3'
miRNA:   3'- aCCCUGCAGCAGGaGCAgcucGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.